RetrogeneDB ID:

retro_slyc_8

Retrocopy
location
Organism:Tomato (Solanum lycopersicum)
Coordinates:7:56368401..56368677(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:Solyc07g042840.1
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:Solyc09g066430.2
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_slyc_8
ATGGTGAGAAGCCATATGAACTTCAAGATGCTTTCACTTACAGATATCAACATTGACATCAAAAGAAATCCAAAGAAGAA
GACCCTGGTTGAGGCTATGGAAGCTGCTGATGTGAAGACCAAGTGGGTGAACAATTCATGGGAAAGGAAGTTGATAGTGC
AGAAGAGGAGAGCTGCACTTAACCATTTTGACAGGTTCAAGCTTATGCTGGCAAAGATTAAGAGAGTTGGAGTTGTGAGG
CAGGAGCTTGCAAAGCTCAAGAAGACTGTTGCTTGA

ORF - retro_slyc_8 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 87.91 %
Parental protein coverage: 68.42 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMVRSQMNFKRLSLTDIKIDIKRIPKKKTLVEAMEAADVKTKWENSSWGRKLIVQKRRAALNDFDRFKLML
MVRS.MNFK.LSLTDI.IDIKR.PKKKTLVEAMEAADVKTKW.N.SW.RKLIVQKRRAALN.FDRFKLML
RetrocopyMVRSHMNFKMLSLTDINIDIKRNPKKKTLVEAMEAADVKTKWVNNSWERKLIVQKRRAALNHFDRFKLML
ParentalAKIKRAGVVRQELAKLKKIAA
AKIKR.GVVRQELAKLKK..A
RetrocopyAKIKRVGVVRQELAKLKKTVA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Solanum lycopersicum was not studied using RNA-Seq expression data.
Solanum lycopersicum was not studied using ChIP-Seq data.
Solanum lycopersicum was not studied using EST data.
Solanum lycopersicum was not studied using FANTOM5 data.
retro_slyc_8 was not experimentally validated.

Retrocopy orthology:
Solanum lycopersicum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Solanum lycopersicum Solyc09g066430.2 1 retrocopy
retro_slyc_8 ,



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