>retro_slyc_93
ATGACTTACACGGCACTAGACACATTCTATCTTGTGGAGGAGCAGCTTAGAAACTCGCCTTCTAGGAAAGATGGAATTGA
TGAAGTTACTAAAACAGCACTTCGAATCTATGGTTGTGATCTCATCCAAGAAAGTGGGATTTTGCTCAGATTACCTCAAG
CTGTAATGGCCACTGGTCAAGTATTACTTCATCGCTTTTAGTGCAAGAAATCATTTGCCCATTTTAATGTGAATAGTATT
GCAGCTAGTTGTGTTTGGCTTGCATCAGAACTCAAAGAAGCCCGAGAAAAGCAACGCAGGTGTTTGTTGTTTTCCACAGA
ATGGAATATAAGAGAGAAAACTTACCTGTAGAACATCTGGATACATCTTCGAAAAAATATATTGATTTGAAAGCAGACCT
AATCAGAACAGAGAGGCATCTTTTAAAAGAGATGGGTTTTATCTGCCATGTCGAGCATCCTCATAAATTTATATCAAACT
ACCTTGCAACTCTTGAAACACCTGCAGAATTGAGACAAGAAGCTTGGAACCTTGCAAATGACAGTTTGCGCACAACACTC
GGTGTAAGATCAAGAATGAGGTTGTGGCCTGTGGAGTTGTATATGCTGCAGCCCGTAGATTTCAAGTGACCCTCCCAGAG
AATCCTCCTTGGTGGAAGGCATTTGATGCAGAAAAGGCTGATATTGGTGATGTTTGCGGAGTTCTCGCTCATCTTTACAG
CCTTCCAAAGGCGCAATGCATTCCTGTGTGCAAGTACGGAGGCCCCTTTGCTTCATCAAACAGA
ORF - retro_slyc_93 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
85.23 % |
Parental protein coverage: |
61.5 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | MIYTAIDTFYLAEEQLVESPSRKDGIDDVTETALRIYGCDLVQECGILLRLPQAVMATGQVLFHRFYCKK |
| M.YTA.DTFYL.EEQL..SPSRKDGID.VT.TALRIYGCDL.QE.GILLRLPQAVMATGQVL.HRF.CKK |
Retrocopy | MTYTALDTFYLVEEQLRNSPSRKDGIDEVTKTALRIYGCDLIQESGILLRLPQAVMATGQVLLHRF*CKK |
|
Parental | SFARFNVKRVAASCVWLASKLEE-SPRKARQVLVVFHRMECRRENLPIEHLDTSSKKYVDLKADLIRTER |
| SFA.FNV...AASCVWLAS.L.E.SPRKA.QV.VVFHRME..RENLP.EHLDTSSKKY.DLKADLIRTER |
Retrocopy | SFAHFNVNSIAASCVWLASELKE<SPRKATQVFVVFHRMEYKRENLPVEHLDTSSKKYIDLKADLIRTER |
|
Parental | HLLKEMGFICHVEHPHKFISNYLATLETPAELRQEAWNLANDSLRTTLCVR-FKSEVVACGVVYAAARRF |
| HLLKEMGFICHVEHPHKFISNYLATLETPAELRQEAWNLANDSLRTTL.VR..K.EVVACGVVYAAARRF |
Retrocopy | HLLKEMGFICHVEHPHKFISNYLATLETPAELRQEAWNLANDSLRTTLGVR<IKNEVVACGVVYAAARRF |
|
Parental | QVPLPENPPWWKAFDADKAGIDEVCRVLAHLYSLPKAKYIPVCKEGGSFATSNR |
| QV.LPENPPWWKAFDA.KA.I..VC.VLAHLYSLPKA..IPVCK.GG.FA.SNR |
Retrocopy | QVTLPENPPWWKAFDAEKADIGDVCGVLAHLYSLPKAQCIPVCKYGGPFASSNR |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Solanum lycopersicum was not studied using RNA-Seq expression data.
Solanum lycopersicum was not studied using ChIP-Seq data.
Solanum lycopersicum was not studied using EST data.
Solanum lycopersicum was not studied using FANTOM5 data.
retro_slyc_93 was not experimentally validated.
Retrocopy orthology:
Solanum lycopersicum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.