RetrogeneDB ID: | retro_stub_10 | ||
Retrocopy location | Organism: | Potato (Solanum tuberosum) | |
| Coordinates: | 11:7368620..7369001(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | PGSC0003DMG400046105 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | PGSC0003DMG400005907 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_stub_10
ATGGAATTTGAAGAAAACTTTGTTGATGATGACTTTTTGAAGGGTAAATGTCTAATGAATAGTGAAGTAGCATTGATTCT
TCAACACAAATATGAGAAAATGTGTGATGAACATTCAACTAATCAAGTATTTGAAAAGTCATTGCAATATGTGAAGCGTT
TCAGTCAGAATAATAACCCTTATGCTGTTACACAAGTTCGTCACATTCTTAGTAGCTATCCTATTTCTGAAGTCGATCTA
TGTGTTCTTGGTAATCTTTGCCCTAAATCTGTTGAAGAAAGTATTGCCATGGTGCAACCTAAAGGACTTGCAAGACTTGA
CGACGAAGCAATAAAGAAAATACTAACGGAGCTTTCTCTATTAAAGAAATTTGATATGTAG
ORF - retro_stub_10 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 63.2 % |
| Parental protein coverage: | 90.58 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | IGDEFLKAKCLMNCEVALILEHKYEQLQQMSDDPTNQISQVFEKSLQYVKRFSRYKNPDAVRQAREILSR |
| ..D.FLK.KCLMN.EVALIL.HKYE....M.D.......QVFEKSLQYVKRFS...NP.AV.Q.R.ILS. | |
| Retrocopy | VDDDFLKGKCLMNSEVALILQHKYEK---MCDE--HSTNQVFEKSLQYVKRFSQNNNPYAVTQVRHILSS |
| Parental | YPLAEFELCVLGNLCPETVEEGIAMVPSIKNRGRALDEEAIEKMLTDLSLIKKFE |
| YP..E..LCVLGNLCP..VEE.IAMV...K...R.LD.EAI.K.LT.LSL.KKF. | |
| Retrocopy | YPISEVDLCVLGNLCPKSVEESIAMVQP-KGLAR-LDDEAIKKILTELSLLKKFD |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Solanum tuberosum was not studied using RNA-Seq expression data.
Solanum tuberosum was not studied using ChIP-Seq data.
Solanum tuberosum was not studied using EST data.
Solanum tuberosum was not studied using FANTOM5 data.
retro_stub_10 was not experimentally validated.
Retrocopy orthology:
Solanum tuberosum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Solanum tuberosum | PGSC0003DMG400005907 | 1 retrocopy |
retro_stub_10 ,
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