>retro_stub_101
TTGCATCTAATTGAAGATATGGAACTTGTTCTCACCTTAAGATGCCTCTGGAATATTGCTCTTGCTCAACCTGATGACCC
TGAATTCCCGTCCCTCGGCGTTTTTAATTGCATGGCTAGACTTCTCAACAGCTGCACCCGTGACCAAAAATGGCTTTCAA
GAGGTCATAACGTGTATGTCCCTTATTATGCAGCTCATATCATTGGCTCCTACACCATGAACAAAGCTAGATTCTCTGTT
TTGGCTGTTAAATCAGGCGTAATTTCGCCATTAATAGACCTCTTAAGAGGTAAGATAACTTGGGTCGAGCAAAGAGTGGC
TGTTAGAGCACTTGGTCACATTGCGCGACATAGAAGGACATTTGAAGACATTATGGTCCATGAAGTAGAGATTATGAAAC
TAGCCATGGACATAGCTTCCAAATGCATTTTTACAATCTATAGCGAGTTTGTGTGCAAGAAAACTGAAAACAGAGTCGAA
TATCATTGCTATTTGATGACAAAAGGTCTCAGAGAATTCGAAATGGAGAATAAAAAAGCAGAGTCTTGGGCTTGCCAAAT
GCAATGCTGGTCTCTATACCTTCTCAACTGCTTCATTACAAAGAAAAGAAGCATCAATTTAATATGCAAAGAAGATTTTC
TCAAGAATTTATGTGATATATGGGGTGGATTACAGAACCAGAATTCTTTCTCTGGCATTGGCCTAATCAGAAGTCTTTGT
GAAAGCGAAGATGGTAGAAAAAACATTGCTCAATTAGAACAAGTCGTAGAAAATATCTGCAACCTCTCTAGATCATCGGA
CGAATGGCAATTCATGGCAATTGAAAGTCTTTTGGTACTTCTCAAGGATCCAAAAACAAGAAACAGAGTAACCAACATTG
CAGCTCCTTTTCTTGCTGATTTAGTAGAGCTTAGAACTATCAAAGGAAGACGAAAAATCGGTGACATGATAACGCAACTA
CTCTTGCAAGATTATGCTAAAATCAAATATGGTCAAGTGGGGTTCGACGAAATAGGATCACAAAAGGCAATTGAAGAGAT
TTGGGACTTGAAAGTTGAAAAAAGGAAAAGGGATAAAATCATGTCGGAACAAGAAGTGAAGGAAACAGAGCTTTTGGTTT
CCGTTTTAAAACGTGAAGGAAACAAGAAATTTTGGTCAAGTGAGATTGAAGCAGCTGTAAACAAGTACACAAAGGCTTTA
GATTTATGTCCACTAAACTTAAGAAAAGAAAGGATTGTTCTTTATAGCAATAGAGCTCAATGTCATTTAATTTTAGGAGA
AGCAGAGTTAGCTATTAGTGATACAACTCGAGCCTTATGCTTATCAGGTGAAATGAGGCCACATATAAAGAGCCTGTGGC
GAAGATCGCAGGCTTATCACATGAAAGGATTGGCTAGACTAAGTTTAATGGATTGCTTAATGTTCATCAATGAACGAAGC
AAGTTGAATGGAAACAAAAGCAGCACA
ORF - retro_stub_101 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
54.79 % |
Parental protein coverage: |
82.57 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MHLIDEDQELVLVLSGLWTMAMSQPNDKELPSLGIFECMASLINKGINQKSWLQKNQNIYIPYYASHIIG |
| .HLI.ED.ELVL.L..LW..A..QP.D.E.PSLG.F.CMA.L.N.......WL....N.Y.PYYA.HIIG |
Retrocopy | LHLI-EDMELVLTLRCLWNIALAQPDDPEFPSLGVFNCMARLLNSCTRDQKWLSRGHNVYVPYYAAHIIG |
|
Parental | SYTMNNVEFAIKALDCGVLVPLLDLLRGKMTWVEQRVAIRAIGHLASYEKTFKSVAIYEEEIVKLAMNLA |
| SYTMN...F...A...GV..PL.DLLRGK.TWVEQRVA.RA.GH.A....TF......E.EI.KLAM..A |
Retrocopy | SYTMNKARFSVLAVKSGVISPLIDLLRGKITWVEQRVAVRALGHIARHRRTFEDIMVHEVEIMKLAMDIA |
|
Parental | STCLEVVYKEFVGVKDLTMRLKYHCDLLTRGVGGLEMENSKAEEWASQLQCWSLHLLNCFAIKERCLNLI |
| S.C....Y.EFV..K....R..YHC.L.T.G....EMEN.KAE.WA.Q.QCWSL.LLNCF..K.R..NLI |
Retrocopy | SKCIFTIYSEFV-CKKTENRVEYHCYLMTKGLREFEMENKKAESWACQMQCWSLYLLNCFITKKRSINLI |
|
Parental | CEQIFLKELSEMWGGLANDSSPGGVGLIRVLCYNKDGRRCIAESKDVIKNLCNLARSSDDWQYMGIDCLL |
| C...FLK.L...WGGL.N..S..G.GLIR.LC...DGR..IA....V..N.CNL.RSSD.WQ.M.I..LL |
Retrocopy | CKEDFLKNLCDIWGGLQNQNSFSGIGLIRSLCESEDGRKNIAQLEQVVENICNLSRSSDEWQFMAIESLL |
|
Parental | LLLADSGTRYKVLKVASMCLVDLIELRTLGGRSNVGNTITRTLLADF---KQRKVKIKNIGVQQVLEEIW |
| .LL.D..TR..V...A...L.DL.ELRT..GR...G..IT..LL.D....K...V....IG.Q...EEIW |
Retrocopy | VLLKDPKTRNRVTNIAAPFLADLVELRTIKGRRKIGDMITQLLLQDYAKIKYGQVGFDEIGSQKAIEEIW |
|
Parental | GLKVDRKKREQNMSDEKLEEKRVMVSLMKQEGNNSFWLGKIEEAMMKYSEALELCPLRFRKERIVLYSNR |
| .LKV...KR...MS.....E....VS..K.EGN..FW...IE.A..KY..AL.LCPL..RKERIVLYSNR |
Retrocopy | DLKVEKRKRDKIMSEQEVKETELLVSVLKREGNKKFWSSEIEAAVNKYTKALDLCPLNLRKERIVLYSNR |
|
Parental | AQCKLLLGEANDAISDTTKALSLSSPTNSHSKSLWRRSQAYDMKGLAKESLVDCIMFVNCCFKMDYSSSS |
| AQC.L.LGEA..AISDTT.AL.LS.....H.KSLWRRSQAY.MKGLA..SL.DC.MF.N...K.....SS |
Retrocopy | AQCHLILGEAELAISDTTRALCLSGEMRPHIKSLWRRSQAYHMKGLARLSLMDCLMFINERSKLNGNKSS |
|
Parental | S |
| . |
Retrocopy | T |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Solanum tuberosum was not studied using RNA-Seq expression data.
Solanum tuberosum was not studied using ChIP-Seq data.
Solanum tuberosum was not studied using EST data.
Solanum tuberosum was not studied using FANTOM5 data.
retro_stub_101 was not experimentally validated.
Retrocopy orthology:
Solanum tuberosum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.