>retro_stub_135
TTATCCGCAATAGCGGTGTGGATAAGGACCATAGAGCTTGATATTTAACAAATTAAACTACTAATTTAAGATACCATTGG
TCAGGAATGCTTCCGAATAATTAGAAACTGCTTATTACCGTGGAGTCATGGGTATATTATTGGTATACAATGTAACTTAT
GAGTCATCTATTAACAACATCATGAACTGGATTACAAACATTAAAAATATGCTTCCGACAGTTTCAACAAAATTCTTGTC
GGCAGCAAGGCCGACATGGACGAAAGCGAAAATGGTTGTTTCTACTTCCAAAGGTTAAGCACTTGCTAATGAATATGACA
TAATATTCTTAAAAACTAGTGCCAAGAAAAATATGAATGTTGACGGGGTTTTCTTTTTCATAGCTCGGGATATAAAACAA
TGGCTTGCCAAATCTGACTCAAAGGATGAGCCTCAGATGATCAAGATAAATAAACCAGACCAAGGAGCAGGATTTTCACA
GGGTGCCTAAAAATCAGCTTGTTGTGGC
ORF - retro_stub_135 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
70.93 % |
Parental protein coverage: |
78.6 % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | LISIDFKIRTIELDSKRIKLQIWDTAGQERFRTIT-TAYYRGAMGILLVYDVTDESSFNNIRNWIRNIE- |
| L..I...IRTIELD...IKL.I.DT.GQE.FR.I..TAYYRG.MGILLVY.VT.ESS.NNI.NWI.NI.. |
Retrocopy | LSAIAVWIRTIELDI*QIKLLI*DTIGQECFRIIR>TAYYRGVMGILLVYNVTYESSINNIMNWITNIK< |
|
Parental | QHASDNVNKILVGNKADMDES-KRAVPTSKGQALADEYGIKFFETSAKTNMNVEEVFFSIARDIKQRLAE |
| ..ASD..NKILVG.KADMDES.K..V.TSKG.ALA.EY.I.F..TSAK.NMNV..VFF.IARDIKQ.LA. |
Retrocopy | KYASDSFNKILVGSKADMDES>KMVVSTSKG*ALANEYDIIFLKTSAKKNMNVDGVFFFIARDIKQWLAK |
|
Parental | SDSKAEPQTIRINQPDQGAGSSQGAQKSACCG |
| SDSK.EPQ.I.IN.PDQGAG.SQGA.KSACCG |
Retrocopy | SDSKDEPQMIKINKPDQGAGFSQGA*KSACCG |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Solanum tuberosum was not studied using RNA-Seq expression data.
Solanum tuberosum was not studied using ChIP-Seq data.
Solanum tuberosum was not studied using EST data.
Solanum tuberosum was not studied using FANTOM5 data.
retro_stub_135 was not experimentally validated.
Retrocopy orthology:
Solanum tuberosum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.