RetrogeneDB ID: | retro_stub_140 | ||
Retrocopylocation | Organism: | Potato (Solanum tuberosum) | |
Coordinates: | 7:33985905..33986190(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | PGSC0003DMG401028933 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.47 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MGIPKISNDTDLLHPPAELEKQNHKLKRLVQSPNSTFLDVKCQGCFQITTIFSHSQTVVTCPNCQQVLCQ |
MGIPKISNDTDLLHPPAE.EKQ.HKL.RLVQSPNSTFLDVKCQGCF.ITTIFSHSQTVVT..NC.QVL.Q | |
Retrocopy | MGIPKISNDTDLLHPPAEIEKQKHKLMRLVQSPNSTFLDVKCQGCFHITTIFSHSQTVVTFLNC*QVLFQ |
Parental | PSGGRAKLTEGCSFRVKEKDMMVLG |
P.GGRAKL.EGCSFRVKEKDMMVLG | |
Retrocopy | PTGGRAKLIEGCSFRVKEKDMMVLG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Amborella trichopoda | AMTR_s00049p00194290 | 1 retrocopy | |
Aegilops tauschii | F775_26813 | 1 retrocopy | |
Solanum tuberosum | PGSC0003DMG401028933 | 3 retrocopies |
retro_stub_137, retro_stub_138, retro_stub_140 ,
|