RetrogeneDB ID: | retro_stub_35 | ||
Retrocopy location | Organism: | Potato (Solanum tuberosum) | |
| Coordinates: | 10:38909683..38910076(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | PGSC0003DMG400039131 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | PGSC0003DMG400029951 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_stub_35
ATGGACTCATCAAAACAAAATCTCAATGAAGTCACAAATTCAATCGATAAAACCCTAGAAATTCTGAACCAACTTTATCT
CACAAGCTCTTCTAACGACGTAATTCCCCTTGTTCAAGGCATGAATAATCTTGTGCTCGAACTTGATAATATGGCGAAAT
TGGGAGAAAAATATTATATTCAAGTGTCAATAGACGTTATGAACTTGATCGATGATGGAAAGAATTCAGATGAGTATACA
AGAGATATGTTGAATAGTTGTATAGCCAGGAACCAAATCACTAAAGGAAAAACAAATGCATTCAAGGATTTACGAGGGCA
TTTCCTCGAGGAGCTCGATCAGGCTTTCCCTAACGAGGTGGAAGCCTGTAGGCTAGTAAAACATTTGCTTTAG
ORF - retro_stub_35 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 72.09 % |
| Parental protein coverage: | 64.18 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | EESKQNLNQVINSIDKTLGILHQLNLTVSSYNVSSQLPLLQRMNNLVLELDNMAKLGEKCNIQVPMEVLN |
| ..SKQNLN.V.NSIDKTL.IL.QL.LT.SS..V....PL.Q.MNNLVLELDNMAKLGEK..IQV...V.N | |
| Retrocopy | DSSKQNLNEVTNSIDKTLEILNQLYLTSSSNDV---IPLVQGMNNLVLELDNMAKLGEKYYIQVSIDVMN |
| Parental | LIDDGKNPDEFTRDVLNSCIAKNQITKGKTDAFKGLRGHLLEDLEQAFPEEVEAYREIR |
| LIDDGKN.DE.TRD.LNSCIA.NQITKGKT.AFK.LRGH.LE.L.QAFP.EVEA.R... | |
| Retrocopy | LIDDGKNSDEYTRDMLNSCIARNQITKGKTNAFKDLRGHFLEELDQAFPNEVEACRLVK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Solanum tuberosum was not studied using RNA-Seq expression data.
Solanum tuberosum was not studied using ChIP-Seq data.
Solanum tuberosum was not studied using EST data.
Solanum tuberosum was not studied using FANTOM5 data.
retro_stub_35 was not experimentally validated.
Retrocopy orthology:
Solanum tuberosum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Solanum tuberosum | PGSC0003DMG400029951 | 1 retrocopy |
retro_stub_35 ,
|