RetrogeneDB ID: | retro_stub_41 | ||
Retrocopylocation | Organism: | Potato (Solanum tuberosum) | |
Coordinates: | 10:41664764..41665082(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | PGSC0003DMG400024414 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | PGSC0003DMG400020566 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.87 % |
Parental protein coverage: | 72.44 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PKDKAIKRFLVRNIVEQAAVRDVQEACAFELYTLPKLYLKMQYCVSCAIHSKVVRVRSRTDRRVREPPQR |
PK.KAIK.FLVRNIVEQ..VRD...ACAFELYTLPKLYLKMQYCVSCAIHSKVVRV.SRTDRRVREPPQR | |
Retrocopy | PKYKAIKMFLVRNIVEQVDVRDIKKACAFELYTLPKLYLKMQYCVSCAIHSKVVRVCSRTDRRVREPPQR |
Parental | FRRPRDDLPKTGQAPRPAGGPP |
.RRPRDDL.KTG..PRP.GGPP | |
Retrocopy | YRRPRDDLAKTGH-PRPVGGPP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Brassica oleracea | Bo8g090770 | 1 retrocopy | |
Solanum tuberosum | PGSC0003DMG400020566 | 2 retrocopies |
retro_stub_41 , retro_stub_88,
|
Solanum tuberosum | PGSC0003DMG400025305 | 1 retrocopy | |
Solanum lycopersicum | Solyc06g007470.2 | 1 retrocopy |