>retro_stub_49
ATGAGGCAAAACGATTCAGTTGAAGAGTTTGTTGATGTTGCAATTGAAGCAGCTAAGAAAGCTGGAGAGATAATTCGTCA
TGGATTCTACAAGAGTAAGCATGTTGAGCACAAAGGAGTTGTTGATTTAGTAACAGAGACTGATAAGGCATGTGAAGATT
TAATTTTTAATCATCTAAAGCAATGTTTTCCCAGTCATAAGTTTATTGGTGAAGAAACAACTGCTGCTGCTTCTGGAGAT
TTTGAGCTGACTGATGAACCAACTTGGATAGTTGATCCACTTGACGGAACCACCAACTTTGTGCACGGGTTTCCTTTTGT
TTGCGTATCTATCGGTCTCACAATTGAAAAGAAACCAGTAGTTGGTGTTGTTTACAACCCAATTATTGATGAGATTTTCA
CTGCAATCGATGGGAGAGGTGCTTTTCTTAACGGGAAGCCTATCAGAGTATCTTCAGAGTCTCAACTTGTAAAGGCTCTT
GTTGCTACAGAGGTTGGAACAAACAGGGATAAGGCAATTGTAGATGCTACTACAGGGAGAATCAATAGATTGCTTTTCAA
GGTTAGGTCCCTCAGGATGTCTGGTTCTTGTGCATTAAATCTATGTGGAGTGGCGTGTGGAAGGCTTGATCTCTTCTATG
AAATTGAATTTGGTGGTCCTTGGGATGTCGCAGCTGGTGCTCTCATAGTCACAGAAGCTGGAGGACTCGTGCTTGATCCA
TCTGGTTCCGAATTTGACCTAACAGCTCGACGGGTAGCTGCTACAAACGCTCATCTCAAGGACGCTTTTATCAACGCCTT
GAATGAATCAGAATGA
ORF - retro_stub_49 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
88.48 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MAQNGSVEEFLDVAVEAAKKAGEIIRQGFYKTKHVEHKGVVDLVTETDKACEDLIFDHLKQRFPSHKFIG |
| M.QN.SVEEF.DVA.EAAKKAGEIIR.GFYK.KHVEHKGVVDLVTETDKACEDLIF.HLKQ.FPSHKFIG |
Retrocopy | MRQNDSVEEFVDVAIEAAKKAGEIIRHGFYKSKHVEHKGVVDLVTETDKACEDLIFNHLKQCFPSHKFIG |
|
Parental | EETTASC-GNFELTDEPTWIVDPLDGTTNFVHGFPFVCVSIGLTIEKKPTVGVVYNPIIDELFTAIDGKG |
| EETTA...G.FELTDEPTWIVDPLDGTTNFVHGFPFVCVSIGLTIEKKP.VGVVYNPIIDE.FTAIDG.G |
Retrocopy | EETTAAASGDFELTDEPTWIVDPLDGTTNFVHGFPFVCVSIGLTIEKKPVVGVVYNPIIDEIFTAIDGRG |
|
Parental | AFLNGKPIKVSSQSELVKALLATEAGTNRDKLTVDATTGRINSLLFKVRSLRMCGSCALNLCGVACGRLD |
| AFLNGKPI.VSS.S.LVKAL.ATE.GTNRDK..VDATTGRIN.LLFKVRSLRM.GSCALNLCGVACGRLD |
Retrocopy | AFLNGKPIRVSSESQLVKALVATEVGTNRDKAIVDATTGRINRLLFKVRSLRMSGSCALNLCGVACGRLD |
|
Parental | LFYELEFGGPWDVAGGAVIVKEAGGFVFDPSGSEFDLTARRVAATNAHLKDAFIKALNE |
| LFYE.EFGGPWDVA.GA.IV.EAGG.V.DPSGSEFDLTARRVAATNAHLKDAFI.ALNE |
Retrocopy | LFYEIEFGGPWDVAAGALIVTEAGGLVLDPSGSEFDLTARRVAATNAHLKDAFINALNE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Solanum tuberosum was not studied using RNA-Seq expression data.
Solanum tuberosum was not studied using ChIP-Seq data.
Solanum tuberosum was not studied using EST data.
Solanum tuberosum was not studied using FANTOM5 data.
retro_stub_49 was not experimentally validated.
Retrocopy orthology:
Solanum tuberosum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.