>retro_stub_54
ATGGGGAGCCAAATTGCTGTCCCTGTGAAAGAAACCTTCTTCATATCACATGGTTCCCCAATGCTTTCAATAGATGATTC
CTTACCTGCCAGACATTTCTTGAAATGCTTCAAACAGAAAGTCTTCACCCAGAAACCCAATTCAATTTTGGTGATCTCTG
GTCATTGGGAGACTTCAGAGCCTACTGTGAATTGCATCAATGGCCTCAATGACACTATTTACGACTTCTACGGCTTCCCA
GAACAGATGTACCAGCTGAAATATCAAGCACCAGGAGCTCCAAAATTAGCCAAAAGAGTGAAGGAACTGCTCAAGTCATC
TGGTTTCAATCGAGTGCACGAAGACAATAACCGAGGCCTAGATCATGGTGCATGGGTGCCTCTTATGCTCATGTATCCAG
AGTCTGACATCCCAGTCTGCCAGCTTTCTGTCCAGACAAAGAAGGATGGAACTCATCATTTTAACATTGGGAAAGCATTA
GCCCCTCTCAAGGAAGAGGGTGTCCTCATAGTTGGTTCTGGATCTGCAACTCACAACTTGAGGGCTTTGCGCGATACGGC
TGGCGTCGCTTCTTGGGCTATGGATTTTGACAATTGGCTTAAGGAATCCCTTGTTAATGGAAGGTATGAAGATGTCAACA
ACTATATGACAAAAGCACCTTGTGCCAAAATTGCACACCCATGGCCTGACCACCTGTATCCATTACATGTAGCAATGGGT
GCAGCAGGTGAAAATGCCAAAGCTGAACTTATTCATCATAGCTGGAGCAGCCATGCTCTTTCTTACGCCTCCTACAAGTT
TAAGTCACAGCCTAAGTAG
ORF - retro_stub_54 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
73.48 % |
Parental protein coverage: |
96. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | LPVKETFFISHGSPTLSIDESLPARTFLKSFKERFMINQKPNSILVISAHWETSEPTVNSIRGRQDTIHD |
| .PVKETFFISHGSP.LSID.SLPAR.FLK.FK......QKPNSILVIS.HWETSEPTVN.I.G..DTI.D |
Retrocopy | VPVKETFFISHGSPMLSIDDSLPARHFLKCFKQK-VFTQKPNSILVISGHWETSEPTVNCINGLNDTIYD |
|
Parental | FYGFPKSMYQLKYPAPGSPELAKRVKDVLMASGFPIVHEDKKRGLDHGAWVPLMLMYPEADIPVCQLSVQ |
| FYGFP..MYQLKY.APG.P.LAKRVK..L..SGF..VHED..RGLDHGAWVPLMLMYPE.DIPVCQLSVQ |
Retrocopy | FYGFPEQMYQLKYQAPGAPKLAKRVKELLKSSGFNRVHEDNNRGLDHGAWVPLMLMYPESDIPVCQLSVQ |
|
Parental | PNRDGTYHYNLGKALASLKDEGVLIIGSGSATHNLRALGPSKNVSSWALEFDNWLKDALLSGRHQDVNNY |
| ...DGT.H.N.GKALA.LK.EGVLI.GSGSATHNLRAL.....V.SWA..FDNWLK..L..GR..DVNNY |
Retrocopy | TKKDGTHHFNIGKALAPLKEEGVLIVGSGSATHNLRALRDTAGVASWAMDFDNWLKESLVNGRYEDVNNY |
|
Parental | DMKAPHAKVAHPWPEHIYPLHVALGAAGEGVNGELIHHSWDLGALSYASYRFPS |
| ..KAP.AK.AHPWP.H.YPLHVA.GAAGE....ELIHHSW...ALSYASY.F.S |
Retrocopy | MTKAPCAKIAHPWPDHLYPLHVAMGAAGENAKAELIHHSWSSHALSYASYKFKS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Solanum tuberosum was not studied using RNA-Seq expression data.
Solanum tuberosum was not studied using ChIP-Seq data.
Solanum tuberosum was not studied using EST data.
Solanum tuberosum was not studied using FANTOM5 data.
retro_stub_54 was not experimentally validated.
Retrocopy orthology:
Solanum tuberosum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.