RetrogeneDB ID: | retro_stub_87 | ||
Retrocopylocation | Organism: | Potato (Solanum tuberosum) | |
Coordinates: | 10:11094291..11094657(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | PGSC0003DMG400017151 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.61 % |
Parental protein coverage: | 87.14 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | RGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPELRKK |
R.G........S.GL.VAATVNCAD.TGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP.L.KK | |
Retrocopy | RPGCRNEEDEVSSGLSVAATVNCADSTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPYLKKK |
Parental | VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD |
VM.AVIVRQRKPWRRKDGVFMYFEDNAGVI.NPKGEMKG.A.TGPIGKE..D | |
Retrocopy | VMLAVIVRQRKPWRRKDGVFMYFEDNAGVIANPKGEMKGFAMTGPIGKE*ID |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Medicago truncatula | MTR_7g098290 | 1 retrocopy | |
Solanum tuberosum | PGSC0003DMG400017151 | 2 retrocopies |
retro_stub_123, retro_stub_87 ,
|
Solanum lycopersicum | Solyc09g090610.2 | 1 retrocopy |