RetrogeneDB ID:

retro_taes_123

Retrocopy
location
Organism:Wheat (Triticum aestivum)
Coordinates:3B:592762728..592764621(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:Traes_1AS_DD0497955
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_taes_123
ATGGTTTTTAGAGGAAGACATCAGATGAAGAAAGCTCTAATAAAATATGGCATTAAGAAACATGTGCATATTGCTTTCAC
AAAGGATGAAAATCATAAAGTAGGTGCAAAGTGTACTTGGCCTGGCTGCAACTGGATGATCTATGCTTCTAAAACTACTA
GAAATAAGTGGCTACAGGTGTCTACCTTTGTAGATGAGCACCATTGCATTCCAAGAAGAGATAACAAACTGGTCACATCA
ACTGTTATTGCTACAAAATATGGCAGGCTTATAAGAGCAAATCCAAATTGGAAGTTAGAAGATTTGAGGAAAACTGTACT
TGAGGACTTATTTGCTGCTGTGACAGTTGCACAGTGCAAGAAGGCAAAGAGAATGGTCATGCAGAAACTATTGCATTCCA
CTGAAGGAGAGTACTCAAAATTATTTAATTATCAGTTAGAGCTGCTGAGAACTAATCCTGGAAGCACAGTTGCAGTGAAG
TTGGACCATAATGGAAAGGATGGGTCATATGTATTTCAAAGGTTTTACATGTGTTTTGATGCCTTGAAGAAAGGTTTCTT
GGCAGGTTGTAGAAAAGTTATTGGCCTTGATGGTTGTTTTTTCAAAGGTGCTTGCTATGGACAGATGTTGTGTGCTATAG
GAAGAGATGCAAATAACCAGATGTATCCTATTGCTTGGGCTGTTGTGGAGAAAGAAAATTATGAGTCATGGTTCTGGTTT
CTTGCCAAAATAAACCAGGACTTGAAAATAAGCAATCAAGGAGATGGATATGTATTTATGTCAGATCAACAAAAGGGACT
TATAGGGGCAATGGATGACATTTTTCCTAAAGCTGAGCATAGAATGTGTGCAAGACACATATATGCTAATTGGAAGAAAA
AACACCCAGACCATGATCTTCAGAAAAGGTTTTGGAGATGTGCAAAATCACCAAACAAAGTGATTTTCAACTACAACAGG
GCCAGGCTAGCACAATTTACTGTTGAGGGTGCAAAAGATATGATGAACACTGATCCAGTACATTGGAGTAGGGCCTACAT
GAAGCTGGGGTCTAATTGTGATTCAGTTGATAACAACATGTGTGAATCTTTCAACAACTACATCCTGTTAGCTAGGTACC
TTGCTATTGTCTCAATGCTTGAGTGGATCAGGTGCAAAATTATGGTGAGGGTACAAGAAAATAGAGGGAAGTCAGTTAAC
TGGAAAGGAACTATATGTCCCAACATTTTCAAAAAACTGAAGCAAAACATAAGGAGATCAGGTTTCTGCCATGTGCTGTG
GAATGGGAAAGATGGATTTGAAGTGCAAGAGCATGAGAAATTCAAATTTACTGTTAACTTGCAGCTCTGGACTTGCTCGT
GTAGATATTGGCAGCTGTCAGGTTTACCCTGCTGCCATGCCATTAGTGCTATCTATAAAACAGGACAAAAAATTGATGAT
TATATTGCTCCTTGCTACTCCATAGAAGTGTACAACAAGATATATGATCATTGCTTACAACCTTTGGAGGGAGAGGAGAG
TTGGCCTATTTCAACAAATCCAAAGCCACAACCACCTGGTCACATTAGCTTGCCTGGAAGGCCTAAAACAGAAAGAATGA
GAGAGGAAGGAGAAAAACCTAAGGGTACTAAGATGAGCAAAGTAGGTGGCAAGATCACTTGTAGTTCTTGCAAAAGGCAA
GGACATAATAGATCAAGCTGTAAGAACAATGATGGAGCTAAACATCATGGAAATGCTCATTTGGTCGATGCACATGGACC
GAAATCACCTGAATTGGGGGCTGATTGGTCGACCGGCTCCCCCAATCGATGAAAACACCTGAAATCTGCCAAGTCAGCAC
TGTCCAGTCAGCAAGGAGACTAGTCAAAACCACCTAAATCTGGTGCAAAACCA

ORF - retro_taes_123 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 59.08 %
Parental protein coverage: 90.41 %
Number of stop codons detected: 2
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAFRDSREFKQALVKYGLANFHHLRFPKDEKKRVSAECSWPGCPWSIYGSISSRSDWLLVVRYKNEHTCI
M.FR.....K.AL.KYG.....H..F.KDE...V.A.C.WPGC.W.IY.S...R..WL.V.....EH.CI
RetrocopyMVFRGRHQMKKALIKYGIKKHVHIAFTKDENHKVGAKCTWPGCNWMIYASKTTRNKWLQVSTFVDEHHCI
ParentalPRRDNKLVTSTVIAKKYFRQIRHNPTWHVEHMQEAVLEDLLADVSLSQCKRAKKLVMEKLTDLTNGEYSR
PRRDNKLVTSTVIA.KY.R.IR.NP.W..E.....VLEDL.A.V...QCK.AK..VM.KL...T.GEYS.
RetrocopyPRRDNKLVTSTVIATKYGRLIRANPNWKLEDLRKTVLEDLFAAVTVAQCKKAKRMVMQKLLHSTEGEYSK
ParentalVYDYHLELVRSNPGSTVAVTLDPEIFDKP-VFQRMYICLDACKKGFLAGCRRVVGLDGCFLKGSVSGQIL
...Y.LEL.R.NPGSTVAV.LD....D...VFQR.Y.C.DA.KKGFLAGCR.V.GLDGCF.KG...GQ.L
RetrocopyLFNYQLELLRTNPGSTVAVKLDHNGKDGSYVFQRFYMCFDALKKGFLAGCRKVIGLDGCFFKGACYGQML
ParentalCAIGRDSNNQMYPIAWATVEVESYDSWYWFLSFLQKDLQISNNGDGWVFISDQQKGLIRAVNEIVPEAEH
CAIGRD.NNQMYPIAWA.VE.E.Y.SW.WFL.....DL.ISN.GDG.VF.SDQQKGLI.A...I.P.AEH
RetrocopyCAIGRDANNQMYPIAWAVVEKENYESWFWFLAKINQDLKISNQGDGYVFMSDQQKGLIGAMDDIFPKAEH
ParentalRMCARHIYANWRKVHRDKKLQKMFWACAKSSDVTQFNYNRAKLAQKSVEGAKDILKTAPEHWSRAYFKLG
RMCARHIYANW.K.H.D..LQK.FW.CAKS.....FNYNRA.LAQ..VEGAKD...T.P.HWSRAY.KLG
RetrocopyRMCARHIYANWKKKHPDHDLQKRFWRCAKSPNKVIFNYNRARLAQFTVEGAKDMMNTDPVHWSRAYMKLG
ParentalSWCDSVENNLCESFNNAIMKARFFPVITTNEIIRKKVMVRIQENRDKSNSWPGTICPNVFKKLKLNIKRS
S.CDSV.NN.CESFNN.I..AR........E.IR.K.MVR.QENR.KS..W.GTICPN.FKKLK.NI.RS
RetrocopySNCDSVDNNMCESFNNYILLARYLAIVSMLEWIRCKIMVRVQENRGKSVNWKGTICPNIFKKLKQNIRRS
ParentalGLCQVLWNGKEGFEVQEGVHRRYTVNLEAWKCSCRYWELAGLPCPHAISAIYTCGKKLDDYIAPCYSISE
G.C.VLWNGK.GFEVQE......TVNL..W.CSCRYW.L.GLPC.HAISAIY..G.K.DDYIAPCYSI..
RetrocopyGFCHVLWNGKDGFEVQEHEKFKFTVNLQLWTCSCRYWQLSGLPCCHAISAIYKTGQKIDDYIAPCYSIEV
ParentalYNKIYDHVLQPVEGKENWPVADMPKPHPPPHRVMPGRKKTKRRREEGEKPQGNKLSKKGIRISCSVCGSF
YNKIYDH.LQP.EG.E.WP....PKP.PP.H...PGR.KT.R.REEGEKP.G.K.SK.G..I.CS.C...
RetrocopyYNKIYDHCLQPLEGEESWPISTNPKPQPPGHISLPGRPKTERMREEGEKPKGTKMSKVGGKITCSSCKRQ
ParentalDHNKRKCLGNPNRDKKQKDNYKRAAQRARKKKQKESEINTQVPQPPKRTNNAVSSSSRAPPNPAKRAKKQ
.HN...C..N.....K...N.........K.........T..P...K....A.S..S.......K..K..
RetrocopyGHNRSSCKNNDG--AKHHGNAHLVDAHGPKSPELGADWSTGSPNR*KHLKSAKSALSSQQGD*SKPPKSG
ParentalAPP
A.P
RetrocopyAKP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Triticum aestivum was not studied using ChIP-Seq data.

EST - click to see more details

Triticum aestivum was not studied using EST data.

TSS - click to see more details

Triticum aestivum was not studied using FANTOM5 data.

Lab - click to see more details

retro_taes_123 was not experimentally validated.

Retrocopy orthology:
Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Triticum aestivum Traes_1AS_DD0497955 1 retrocopy
retro_taes_123 ,


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