RetrogeneDB ID: retro_taes_13

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: 7D:181410960..181411665(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: Traes_7DL_91E866850
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_5BL_402FB4A3F
• Aliases: None
• Description: None

Sequence

>retro_taes_13
ATGGCCGCCGCCGCCCTCCTCCGCCGCTCGCCGGCGGCGCGCGCCCTCCTTTCGCCGGCCCTCTCCTCCCGCCTCGTCGC
CTCCAAGCCCCACTCCTCGTCCCCCGCGCCACCGCCGCCATCGTCGAAGCCCGCCAGCACCAAGACCTTCTCGATCTACC
GCTGGGACCCGGACTCCCCGTCGACCAAGCCCCACCTCAAGGACTACAAGGTGGACCTCTCGGACTGCGGCCCCATGGTG
CTCGACGCGCTCCTCAAGATCAAGAACGAGCAGGACCCGTCCCTCACCTTCCGCCGGAGCTGCCGCGAGGGCATCTGCGG
CAGCTGCGCCATGAACATCGACGGCGACAACGGGCTGGCCTGCCTCACCAAGATCTCCTCGGAGGCGGCCGGGGCCTCCA
CGATCTCGCCGCTCCCCCACATGTTCGTCGTCAAGGACCTCGTCGTCGACATGACCAACTTCTACAACCAGTACAAGAGC
GTGGAGCCGTGGCTCAAGCGCAAGGACCCGCCGGCGGCCGGAGGGAAGGAGATCTACCAGTCCAAGGCCGACCGCGCCAA
GCTCGATGGCATGTACGAGTGCATCCTCTGCGCCTGCTGCTCCACGTCCTGCCCGTCCTACTGGTGGAACCCAGAGGAGT
ATCTCGGCCCCGCCGCGCTGCTCCATGCCAACAGGTATACCCGCACCTTCCTCATAGGCACTTGA

Alignment

ORF - retro_taes_13 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 66.3 %
• Parental protein coverage: 67.41 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KAATLKEFQIYRWNPDAHG-RPFLQSYFVDLGTCGPMVLDVLQKIKSEHDSTLAFRRSCREGICGSCSMN
          K.A..K.F.IYRW.PD.....P.L..Y.VDL..CGPMVLD.L.KIK.E.D..L.FRRSCREGICGSC.MN
Retrocopy KPASTKTFSIYRWDPDSPSTKPHLKDYKVDLSDCGPMVLDALLKIKNEQDPSLTFRRSCREGICGSCAMN

Parental  IDGVNTVACLKPIDTDTSTATMITPLPHMYVVKDLVVDLTNFYQQYKSIEPWLKTK-RPAPEGREHAQSP
          IDG.N..ACL..I......A..I.PLPHM.VVKDLVVD.TNFY.QYKS.EPWLK.K..PA..G.E..QS.
Retrocopy IDGDNGLACLTKISSEAAGASTISPLPHMFVVKDLVVDMTNFYNQYKSVEPWLKRKDPPAAGGKEIYQSK

Parental  GERRKLDGLYECILCACCSTACPSYWWNSEDFLGPAALLHAYRW
          ..R.KLDG.YECILCACCST.CPSYWWN.E..LGPAALLHA.R.
Retrocopy ADRAKLDGMYECILCACCSTSCPSYWWNPEEYLGPAALLHANRY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_13 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_5BL_402FB4A3F	1 retrocopy	retro_taes_13 ,