RetrogeneDB ID: retro_taes_147

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: 5D:100904411..100904929(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_6DS_F8BA09F24
• Aliases: None
• Description: None

Sequence

>retro_taes_147
CGACAAGGAGAGCCGCCGGCGAAGCAGAGGAACATCGATCGCATCGCCCCAACTAACCACCCCTAGGATCTCCATGAACA
GTCGCCCTCTTCCACCGCTGAGACTGCACATAGGATGGTGTTTCGGTGATTCCCGAAAGGCAAACCTCACGATCAACACA
GAAAGAAGTAGGGTCGTGGCAGAGGTCCCGTAAGAGTAGTCGGCGTCACCAACATTACCGTTCATGGTGATCGGTTGTGG
AGAGCTTTGGTTTTATCATCCAATTCAACGAATGCAACATAACTGGGATGATATTTCCGCATGCATCTGTAGCCACGAAT
ATCCCGATCTTCCCTCACAGTGACAAGATAAGAGTCTATCTATTCGATGGTGCATCTTACGACGCCACAGTAGAAGCTTT
TGACGATCATTGGAATTTATTAGCGATATATATTTCATTTGAGTCTGCCATCAAAACGATGAGTATGGTGGAAATTAGCG
AGAATAGAAGTGCAATGGATGTAAATCTTTGAGGATTT

Alignment

ORF - retro_taes_147 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 60.67 %
• Parental protein coverage: 80.93 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  RHGEPPAKQRNIDPIVRTDHPWDL-PATVPLPHRCDCPEDSVLVIP-REANLPIDREAKKVVARVS-QAV
          R.GEPPAKQRNID.I..T.HP.DL.P.TV.L.HR.DC..D.V.VIP.R.ANL.I..E...VVA.V....V
Retrocopy RQGEPPAKQRNIDRIAPTNHP*DL<P*TVALFHR*DCT*DGVSVIP<RKANLTINTERSRVVAEVP<VRV

Parental  VGVASITFYGDQLWRAS-GFIVEFDESSMIGTIFSCATVSEHILMFPKIDKIREYLFDGTSYDASIEACD
          VGV..IT..GD.LWRA..GFI..F.E....G.IF..A.V...I..FP..DKIR.YLFDG.SYDA..EA.D
Retrocopy VGVTNITVHGDRLWRAL<GFIIQFNECNITGMIFPHASVATNIPIFPHSDKIRVYLFDGASYDATVEAFD

Parental  NHWNLLVLSVSFGRAVKTMNMVEISENRNAMDVHLQGF
          .HWNLL....SF..A.KTM.MVEISENR.AMDV.L.GF
Retrocopy DHWNLLAIYISFESAIKTMSMVEISENRSAMDVNL*GF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_147 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_6DS_F8BA09F24	1 retrocopy	retro_taes_147 ,