RetrogeneDB ID: retro_taes_159

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: 7B:245519984..245520289(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_3AL_BC81D5BF3
• Aliases: None
• Description: None

Sequence

>retro_taes_159
TGCTTGGGGAATGCCCTGACCTCTCGTGGATTCTTCACTTCATAAACTAATAAATTCTTCGAAAAGCAACTGGTTGTTTC
CAGAGGGCTGTTGATGTGGAACCAGCAAATGAGTTGTACAGGAAGTCATTGGATTTGTCATCAAAGGCACATAAACTACA
TTTGGATAACCATAGGCAAATCGCATCTCAGGCCTCACAAGGAGCACCCTCGTCCTTAAATGCAAGACAATCAAGGAAAA
AGAAGAACAATGTGACAGGCTGGATCGGGGCAGCGTGGGGGCCTGCTGCCGTGAAAATAATGGTG

Alignment

ORF - retro_taes_159 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.7 %
• Parental protein coverage: 65.43 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  CLGNALTSRGFFTSETVQANECFE-KATGCFQRAVDVEPANELYRKSLDLSSKAPELHMEIHRQIASQAS
          CLGNALTSRGFFTS.T...N..FE.KATGCFQRAVDVEPANELYRKSLDLSSKA..LH...HRQIASQAS
Retrocopy CLGNALTSRGFFTS*T---NKFFE<KATGCFQRAVDVEPANELYRKSLDLSSKAHKLHLDNHRQIASQAS

Parental  QGAPSSSNARQSRKKKKNNDFWYDLAGWGILLVGIGV
          QGAPSS.NARQSRKKK.N...W...A.WG...V.I.V
Retrocopy QGAPSSLNARQSRKKKNNVTGWIG-AAWGPAAVKIMV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_159 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_3AL_BC81D5BF3	1 retrocopy	retro_taes_159 ,