RetrogeneDB ID: | retro_taes_19 | ||
Retrocopy location | Organism: | Wheat (Triticum aestivum) | |
| Coordinates: | IWGSC_CSS_4DS_scaff_440756:53..287(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | Traes_4DS_316823E57 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | TRAES3BF136000090CFD_g | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_taes_19
GCTGACGGTGAATGGTCCACCGGTTTCTGCGGTTGCTGCTCGGATTGCTCCAGCTGTTGTTTAACATGTTGGTGTCCTTG
CATTACCGTTGGCCGAATCGCAGAGATTGTAGACCAAGGTTCCTCTTCATGCTGTGCGACTGGTGCGCTGTACATGCTAT
CGATGTATACAGTCTTTGGAAGTGCATGCATCTCGTGCAAATACCGAACTAAAATGAGAAAACAATACAACCTT
ORF - retro_taes_19 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 61.84 % |
| Parental protein coverage: | 64.1 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | GNWSVGLCDCFGDCSSCCLTCWCPCVTFGRVAEIVDGGSSSCCMHGTLYVL-LGSVGWNWLYSCTGRSSM |
| G.WS.G.C.C..DCSSCCLTCWCPC.T.GR.AEIVD.GSSSCC..G.LY.L....V......SC..R..M | |
| Retrocopy | GEWSTGFCGCCSDCSSCCLTCWCPCITVGRIAEIVDQGSSSCCATGALYMLSMYTVFGSACISCKYRTKM |
| Parental | RAQYNL |
| R.QYNL | |
| Retrocopy | RKQYNL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Triticum aestivum was not studied using RNA-Seq expression data.
Triticum aestivum was not studied using ChIP-Seq data.
Triticum aestivum was not studied using EST data.
Triticum aestivum was not studied using FANTOM5 data.
retro_taes_19 was not experimentally validated.
Retrocopy orthology:
Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Triticum aestivum | TRAES3BF136000090CFD_g | 1 retrocopy |
retro_taes_19 ,
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