RetrogeneDB ID: retro_taes_201

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: IWGSC_CSS_4BS_scaff_4946640:2608..2916(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: TRAES3BF073500010CFD_g
• Aliases: None
• Description: None

Sequence

>retro_taes_201
GCAACCATTCCTAATTTTTTTGTTCTTGTCCAATTTGGATTTGGATGCAGCAGGTGCGAGCGTGCGTCTCATTTGCAGCC
ACTTCCAAGCGTCCCAGCTGCCAAGTCCCACGCGTCCACTTATGTGCTTGGATGTTGGAACAATTGGCTACATCGATCCG
ATGTGTACAGCTCCGGTATCGTCCTTCTGGAGTTGCTCAAAGGGATGAAGACCGTCGACAACGATTGCAATTTGCACCAG
TTGGTAAGTCATTCACACTAAACTCCCAAGTCTCAGATCTTATTACATCTACCTTTTCATTGCATTGT

Alignment

ORF - retro_taes_201 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.19 %
• Parental protein coverage: 57.3 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  ASRPKSYILGMFSYP-SRCERASHLQPLPSIPAAKSHASTYVLGCWNNWLHRSDVYSSGIVLLELLKGMK
          A..P....L..F....SRCERASHLQPLPS.PAAKSHASTYVLGCWNNWLHRSDVYSSGIVLLELLKGMK
Retrocopy ATIPXXXVLVQFGFGCSRCERASHLQPLPSVPAAKSHASTYVLGCWNNWLHRSDVYSSGIVLLELLKGMK

Parental  TVDNDCNLHQLI-MSRADDNAVMEAVDSEVSVTC
          TVDNDCNLHQL...S......V.....S..S..C
Retrocopy TVDNDCNLHQLV<KSFTLNSQVSDLITSTFSLHC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_201 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	TRAES3BF073500010CFD_g	2 retrocopies	retro_taes_133, retro_taes_201 ,