RetrogeneDB ID: retro_taes_206

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: IWGSC_CSS_4DS_scaff_1478763:2..467(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_7AS_DC51A1D61
• Aliases: None
• Description: None

Sequence

>retro_taes_206
GAGCTCATCCACTGTAGATGGGCTATGCTCGCTGTTCCAGGGATTTTGGTACCAGAGGCTTTGGGATATGGGAACTGGGT
TAAGGCTCAGGAATGGGCAGCAGTACCTGGAGGACAAGCCACTTACTTGGGGAACCCAGTCCCTTGGGGTACTTTGCCCA
CAATCTTGGCTATAGAGTTCTTAGCTATTGCCTTTGTTGAGCACCAAAGGAGTATGGAGAAGGACCCTGAGAAAAAGAAG
TACCCGGGAGGTGCATTTGACCCTCTCGGATACTCCAAAGACCCAAAGAAGTTCGAGGAGTTGAAAGTTAAAGAGATCAA
GAACGGGCGGCTTGCACTGTTGGCGTTTGTAGGCTTCTGTGTGCAACAATCGGCCTACCCAGGCACAGGACCATTGGAGA
ACTTGGCTACTCACTTGGCCGATCCATGGCACAAAAACATTGGCGATATTGTTATCCCTTTGAAC

Alignment

ORF - retro_taes_206 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.03 %
• Parental protein coverage: 65.13 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  EIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQR
          E..HCRWAML.VPG.LVPEALG.GNWVKAQEWAA.P.GQATYLGNPVPWG.LPTILAIEFLAIAF.E.QR
Retrocopy ELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQR

Parental  TMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLA
          .MEKDPEKKKYPGGAFDPLG.SKDP.KFEELK.KEIKNGRLA.LAFVGFCVQQSAYPGTGPLENLATHLA
Retrocopy SMEKDPEKKKYPGGAFDPLGYSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLA

Parental  DPWHNNIGDIVIPRN
          DPWH.NIGDIVIP.N
Retrocopy DPWHKNIGDIVIPLN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_206 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_2AS_B86EFFF66	1 retrocopy	retro_taes_87,
Triticum aestivum	Traes_7AS_DC51A1D61	1 retrocopy	retro_taes_206 ,