RetrogeneDB ID:

retro_taes_24

Retrocopy
location
Organism:Wheat (Triticum aestivum)
Coordinates:3B:43776790..43778404(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:TRAES3BF088600010CFD_g
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:Traes_5BL_4FE938B74
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_taes_24
ATGGCAGACGACGGCGTCGATCCCACCCAGTACTACCAGAACAGGCTCAGCGCCCTCGCCACGCAGAAGGCCGCCGGCGT
GAACCCCTACCCGCACGCCTTCCAGCCCACCGTCTCCGTCGCCGACTACGTCCACAGGTACAGGGGCCTGGCAGACGGGG
AGAAGCTGGTGGACATCACGGAGTCCCTGGCCGGGAGGGTCATGAGCAAGAGGACGTCGTCCTCCAGCCTCTTCTTCTAT
GACCTCCATGGTGGGGGCGCCAAGGTCCAGGTCATGGCCGACGCCGGGACATCAGAGCTGGAGACACCCGAGGAGTTCTC
CGCTTTCCACTCCGGCGTGAAGGTCGGCGACGTCGTTGGCGTGTTTGGGTTCCCCGGGAAGAGCAATAGGGGCGAGCTCA
GCATATTTCCTGCCCGGTTCGTTGTGCTCTCGCCCTGCCTGCACATGCTGCCGCGGCAGCCAGATAGGCACCGTCGCGCG
CCGCCGCTACCGTGGGCTCCCGGCATGCCCAGGAACATGGAGAGCTACGCCCTAAAGGACCAGAAGACACGGTACCGTCG
GCGGTACTTTGATCTCATGGTGAACCCCGAGGTGAGGTCCGTCTTCACGACGCGAGCCAGAGTCGTCTCCTTCATCCGCA
GCTTCCTCGACGAGCGCGGGTTTCTGGAGGTGGACACCCCGATGATGAACGTGGTGGCCGGTGGCGCCGCCGCGAGGCCG
TTCGTCACGAACCACAACGACCTCAACATGAAGCTGTACATGCGCATCGCGCCGGAGCTCTACCTGAAGCAGCTCGTCGT
CGGGGGGCTGGACTGCGTGTACGAGATCGGGAGGCAGTTCAGGAACGAAGGCATCGACACGACGCACAACCCGGAGTTCA
CGACGTGCGAGTTCTACATGGCATATACGGATTACAACAACCTCATGGAGCTCACGGAGGAGATGCTGGGCGGCATGGTG
AAGGAGCTCACGGGCGGCTACAAGGTACAGTACCACGCCAACGGGACCGACAAGCCGCCTATCGAGATCGATTTCACGCC
TCCGTTCGCGCGAATCGACATGATCAAGGGACTGGAGGACATGGCCGATCTCAACATACCGGAGGAGGATCTGTCGACTG
ACGATGCCAACGAGTACCTGATGGAGGCCTGTGCCAGGTACGACATTACGTGCCCGCTTCCACACACGACGGCATGGCTG
CTGGACAAGCTTGTCGGGCACTTCTTGGAGGAGACATGCGTGAACCCGACGTTCATCATCAACCATCCGGAGATCATGAG
CCCGCTGGCCAAGTCCCACAGGGACGAGGCCCGGCCTGGACTGACCGAAAGGTTTGAGCTGTTCATCAACAAGCATGAGG
TGTGCAATGCCTACACGGAGCTGAACGACCCCGTCGTGCAGAGGCAGCGGTTTGAGGAGCAGCTGAGGAATCGTCAGGAC
GGTGACGATGAAGCAATGTCCATGGACGAAACGTTCTGCACTGCCCTTGAGTATGGCCTGCCGCCGACCGGAGGCTGGGG
TCTGGGGATTGATCGCCTCACCATGTTGTTGACGGATTCCCAAAACATAAAGGAGGTCCTCCTGTTCCCGGCCATGAAGC
CTCAAGACAGCTAG

ORF - retro_taes_24 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.22 %
Parental protein coverage: 86.44 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalDEDMDPTQYYENRLRTLDALKAGGANPYPHKFLASISVPGYIEKYKGLNEGEKLADVTECLAGRIMNKRT
D...DPTQYY.NRL..L...KA.G.NPYPH.F....SV..Y...Y.GL..GEKL.D.TE.LAGR.M.KRT
RetrocopyDDGVDPTQYYQNRLSALATQKAAGVNPYPHAFQPTVSVADYVHRYRGLADGEKLVDITESLAGRVMSKRT
ParentalSSSKLLFYDLYGDGVKVQVMADARTSELEDTE-FSSFHSGVKRGDIVGICGIPGKSNRGELSVFPRKFVV
SSS.L.FYDL.G.G.KVQVMADA.TSELE..E.FS.FHSGVK.GD.VG..G.PGKSNRGELS.FP..FVV
RetrocopySSSSLFFYDLHGGGAKVQVMADAGTSELETPEEFSAFHSGVKVGDVVGVFGFPGKSNRGELSIFPARFVV
ParentalLSPCLHMMPRQKSEGS-AVPTQWAPGMCRNIEKYVLRDQETRYRQRYLDLMVNHEVRHIFKTRSKIVSFI
LSPCLHM.PRQ......A.P..WAPGM.RN.E.Y.L.DQ.TRYR.RY.DLMVN.EVR..F.TR...VSFI
RetrocopyLSPCLHMLPRQPDRHRRAPPLPWAPGMPRNMESYALKDQKTRYRRRYFDLMVNPEVRSVFTTRARVVSFI
ParentalRRFLDGLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMKLYMRIAPELYLKELVVGGLDRVYEIGKQFRN
R.FLD...FLEV.TPMMN..AGGAAARPFVT.HNDLNMKLYMRIAPELYLK.LVVGGLD.VYEIG.QFRN
RetrocopyRSFLDERGFLEVDTPMMNVVAGGAAARPFVTNHNDLNMKLYMRIAPELYLKQLVVGGLDCVYEIGRQFRN
ParentalEGIDLTHNPEFTTVEFYMAYADYNDLMELTEAMISGMVKELTGGYKIKYHANGVDNPPIEIDFTPPFRRI
EGID.THNPEFTT.EFYMAY.DYN.LMELTE.M..GMVKELTGGYK..YHANG.D.PPIEIDFTPPF.RI
RetrocopyEGIDTTHNPEFTTCEFYMAYTDYNNLMELTEEMLGGMVKELTGGYKVQYHANGTDKPPIEIDFTPPFARI
ParentalDMIEGLEAMAKLEIP-KDISSDETNKYLIDACAKYDVKCPPPQTTTRLLDKLVGHFLEETCVNPTFIINH
DMI.GLE.MA.L.IP..D.S.D..N.YL..ACA.YD..CP.P.TT..LLDKLVGHFLEETCVNPTFIINH
RetrocopyDMIKGLEDMADLNIPEEDLSTDDANEYLMEACARYDITCPLPHTTAWLLDKLVGHFLEETCVNPTFIINH
ParentalPEIMSPLAKWHR--SRPGLTERFELFVNKHEVCNAYTELNDPVVQRQRFEEQLKDRQSGDDEAMALDETF
PEIMSPLAK.HR...RPGLTERFELF.NKHEVCNAYTELNDPVVQRQRFEEQL..RQ.GDDEAM..DETF
RetrocopyPEIMSPLAKSHRDEARPGLTERFELFINKHEVCNAYTELNDPVVQRQRFEEQLRNRQDGDDEAMSMDETF
ParentalCTALEYGLPPTGGWGLGIDRLTMMLTDSQNIKEVLLFPAMKPQE
CTALEYGLPPTGGWGLGIDRLTM.LTDSQNIKEVLLFPAMKPQ.
RetrocopyCTALEYGLPPTGGWGLGIDRLTMLLTDSQNIKEVLLFPAMKPQD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Triticum aestivum was not studied using ChIP-Seq data.

EST - click to see more details

Triticum aestivum was not studied using EST data.

TSS - click to see more details

Triticum aestivum was not studied using FANTOM5 data.

Lab - click to see more details

retro_taes_24 was not experimentally validated.

Retrocopy orthology:
Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Triticum aestivum Traes_5BL_4FE938B74 1 retrocopy
retro_taes_24 ,


Copyright © RetrogeneDB 2014-2017