RetrogeneDB ID:

retro_taes_54

Retrocopy
location
Organism:Wheat (Triticum aestivum)
Coordinates:5B:198569099..198570980(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:Traes_5BL_08FFB5ABF
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:Traes_5BL_2BCCF6926
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_taes_54
GCCAACTCGGGCAACCCCTGCCTCGACCTCTTCTTCCAGGTGGTGCCCGACACGCCGCCCGAGCGCGTGCGCCAGCTGCT
CGCCGCCGCGTGGGCGCACGACGCGCTCACGGCGCTCAAGCTCGCCTGCAACCTCCGCGGCGTCCGCGGCACCGGCAAGT
CGGACAAGGAGGGCTTCTACGCGGCCGCGCTCTGGCTGCACGACAACCACCCGCGCACGCTCGCCTGCAACGTCGCCGCG
CTCGCCGAGTTCGGGTACCTCAAGGACTTCCCCGAGCTGCTCTTCCGCCTCATCCACGGCCCCGACGTGCGCAAGGTCGC
CAGGGAGGGCGCCGCGGCCGAGAAGGTGAGGAGGAAGGAGAAGAACTTCGCCAAGCAGCGGGAGGCCTTGCGGGCTAGCC
TGGCCGGCCGCAAGCGCGCCCGCGAGCTGGCCCCTGTGCCTCCCAAGGCCACCTTCGGCGACTTCCTCTCCGCCGCCCTC
TCCAAGTCCGGCAGGAAGCCCATGGAGGTGGAGACCGTCCCTGTGTCTGTCGCGGTCCAGGAGCCGGCCGAGCAGAAGCC
CGAGGAGATGGAGGTGGACCAGAAGAAGAAGAAGCCCCGGCGGATGTCCAAGAAGGTCCGGAAGGTGGCCAAGCTCGCCG
TGCAGTCGCTGGAGACGTACTACGGCGACCGCGCGTACCGCTTCCTGTTCGAGGCCGTCGCGGACTTCTTCGCCGCCCTC
CTCGCCTCGGACCTCGAGCAGCTGGCCACCGGCGGCAAGAAGAGGAAGATCGGGCTCGCCGCCAAGTGGTGCCCCACGCC
CGGCTCGTCCTTCGACCGCACCACGCTGCTCTGCGAGGCCATCGCCCACCGCCTCTTCCCGCGCGACTCCGACCCAGAGT
ACGCCCAGCTCACGGACGAGCACTACACGTACCGCGCCCTCCACCGCCTCCGCCGCGAGGTGCTCGTGCCACTGCGCAAG
GTGCTGGAGCTCCCGGAGGTGTACATGAGCGCACAGCGGTGGTCGGAGCTTCCCTACACCCGCGTGGCCTCGGTGGCCAT
GCGGCGCTACAAGTTCCTCTTCAAGAAGCACGATGAGGAGCGCTTCGACAAGTACCTGGAGGACGTGGAGGCCGGCAAGG
CCAAGATCTCGGCGGGCGCGCTCCTGCCGCACGAGATCGCCGCCTCCGCCTTAAGTGGCGTGGAGGACGACGTGTCGGAG
CTGCAGTGGCGCCGCATGGTAGACGACCTGCGCTCCAAGGGGGCGCTGCGCAACTGCATCTCCGTCTGCGATGTCTCCGG
CAGCATGGACGGCACCCCTATGCATGTGTGCATCGCGCTGGGCGTGCTCACGTCGGAGCTCAGCGAGGAGCCCTGGGCAG
GCAAGGTGATCACCTTCAGCCAGAGGCCCGAGATCCACCTGATCAAGGGCAAGACCCTTCGGGAGAAGATGAGTTTCGTG
GAGACTATGCAGTGGGACATGAACACCAACTTCCAGGCGGTGTTCGACCAGATCCTCCGCACTGCGGTGGAGGCCCGGCT
GGCGCCGGAGAAGATGATCAGGACCATTTTCGTGTACAGTGACATGGAGTTCGACGAGGCGTCGGCGACCGGCGGGTACT
ATGCTCGCAGCAGTTCGTGGGACACGGACTACGAGGTGATCTGCAAGAAGTTCAGGGCTGCCGGGTACGGCGACGCGGTG
CCCCAGATCATCTTCTGGAACCTGCGTGACTCGAAGTCGACGCCAGTGACCTCGACCCAGCCTGGGGTGGCCATGGTGAG
CGGCTTCTCCAAGAACCTCCTCAAGATCTTCCTGAAGAACGACGGCGTGGTGAACCCCGAGGCCGTCATGATGGAGGCCA
TCGCCGGCGAGGAGTACCAGAAGCTGGAGGTGTTCGATTAG

ORF - retro_taes_54 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 82.19 %
Parental protein coverage: 90.06 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalANSGNPCLDFFFQVVPDTPAERVRGLLAAAWAHDALTALKLACNLRGVRGTGKSDKEGFYAAALWMHEHN
ANSGNPCLD.FFQVVPDTP.ERVR.LLAAAWAHDALTALKLACNLRGVRGTGKSDKEGFYAAALW.H...
RetrocopyANSGNPCLDLFFQVVPDTPPERVRQLLAAAWAHDALTALKLACNLRGVRGTGKSDKEGFYAAALWLHDNH
ParentalPRTLACNIAALAEFGYLKDFPELLFRLIHGPDVRKVAKAAAEAEKARKKEKALGHRRAALRTRLASRRRR
PRTLACN.AALAEFGYLKDFPELLFRLIHGPDVRKVA...A.AEK.R.KEK.....R.ALR..LA.R.R.
RetrocopyPRTLACNVAALAEFGYLKDFPELLFRLIHGPDVRKVAREGAAAEKVRRKEKNFAKQREALRASLAGRKRA
ParentalRRLPPLPPKPTFGDFLAAALWKSMQSKALVVEAVPVSVAV--PEAQKPEVMEVDQKKTSPRKPEMSKKVR
R.L.P.PPK.TFGDFL.AAL.KS...K...VE.VPVSVAV..P..QKPE.MEVDQKK..PR...MSKKVR
RetrocopyRELAPVPPKATFGDFLSAALSKSGR-KPMEVETVPVSVAVQEPAEQKPEEMEVDQKKKKPRR--MSKKVR
ParentalKVAKLAVQSLKTYYGDRAYRFLFDAVADFFAALLTSDLEQLSHGGKTMKIGLAAKWCPTPGSSFDRTTLL
KVAKLAVQSL.TYYGDRAYRFLF.AVADFFAALL.SDLEQL..GGK..KIGLAAKWCPTPGSSFDRTTLL
RetrocopyKVAKLAVQSLETYYGDRAYRFLFEAVADFFAALLASDLEQLATGGKKRKIGLAAKWCPTPGSSFDRTTLL
ParentalCEAIARRLFPRDSDPEYAQLSDEHYTYCALHRLRRQVLVPLRKVLKLPEVYMSAQRWSELPYTRVASVAM
CEAIA.RLFPRDSDPEYAQL.DEHYTY.ALHRLRR.VLVPLRKVL.LPEVYMSAQRWSELPYTRVASVAM
RetrocopyCEAIAHRLFPRDSDPEYAQLTDEHYTYRALHRLRREVLVPLRKVLELPEVYMSAQRWSELPYTRVASVAM
ParentalRRYKFLFKKHDEVRFGRYLDDVKAGKAKISAGALLPHEIAAAALRGQEDDVSELQWRRMVEDLRSKGLLR
RRYKFLFKKHDE.RF..YL.DV.AGKAKISAGALLPHEIAA.AL.G.EDDVSELQWRRMV.DLRSKG.LR
RetrocopyRRYKFLFKKHDEERFDKYLEDVEAGKAKISAGALLPHEIAASALSGVEDDVSELQWRRMVDDLRSKGALR
ParentalNCISVCDVSASMDGKPMEVCIALGVLTSELSERPWKGKVITFHSRASIHLIKGNTLREKMKFVERLEWGG
NCISVCDVS.SMDG.PM.VCIALGVLTSELSE.PW.GKVITF..R..IHLIKG.TLREKM.FVE...W..
RetrocopyNCISVCDVSGSMDGTPMHVCIALGVLTSELSEEPWAGKVITFSQRPEIHLIKGKTLREKMSFVETMQWDM
ParentalSTNFQRVFDQILRTAVDAGLAPQKMIRTVFVYSDMEFNMAS--GAYYGGKPSWDSDYEVICKKFRAAGYG
.TNFQ.VFDQILRTAV.A.LAP.KMIRT.FVYSDMEF..AS..G.YY....SWD.DYEVICKKFRAAGYG
RetrocopyNTNFQAVFDQILRTAVEARLAPEKMIRTIFVYSDMEFDEASATGGYYARSSSWDTDYEVICKKFRAAGYG
ParentalDVVPQIVFWNLRDSRSMPVTSTQPGVAMVSGFSKNILKIFLQNDGVVNPEAIMMQAIAGDEYQKLAVFD
D.VPQI.FWNLRDS.S.PVTSTQPGVAMVSGFSKN.LKIFL.NDGVVNPEA.MM.AIAG.EYQKL.VFD
RetrocopyDAVPQIIFWNLRDSKSTPVTSTQPGVAMVSGFSKNLLKIFLKNDGVVNPEAVMMEAIAGEEYQKLEVFD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Triticum aestivum was not studied using ChIP-Seq data.

EST - click to see more details

Triticum aestivum was not studied using EST data.

TSS - click to see more details

Triticum aestivum was not studied using FANTOM5 data.

Lab - click to see more details

retro_taes_54 was not experimentally validated.

Retrocopy orthology:
Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Triticum aestivum Traes_5BL_2BCCF6926 1 retrocopy
retro_taes_54 ,


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