RetrogeneDB ID: retro_taes_55

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: 4A:172614157..172615057(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: Traes_4AL_99A6C6A3E
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_4BS_2B6A67E9F
• Aliases: None
• Description: None

Sequence

>retro_taes_55
ATGCGAGCTGAGCTGGTTGCAGCAGTGAAGGCGGCCGCAGAGACGGTGGGCTTCTTCCAGGTGGTGAACCACGGCGTGCC
CAAGGCTGTCATGTCGGAGATGCTCGCAGCAGTGCTGGGTTTCCACGAGGAGCCGGTAGGGGCCAAGGCGCTCTACTACG
GCCGGGACTATGGTCGGCCTGTGAGGTACTGGAGCATCTTCGACTTGTTCCAGTCACAGGCGGCCAACTGGCGCGGCACC
TTGATCATCGATACGGCGCCGGAGCTGCCGCCGCCTAAGGAGATCCCACCCACATGCAGGAGCATTGCACCCAAGTACGT
GAGGATGATGCAGCAGCTGGGACGCACCCTGCTTGAGCTGCTGTCGGAGGCGCTGGGCCTTCGCAGTGGCCACTTGGAGG
AGGACGCCGCATGCCTGGAGAGGCTCGCCGGCCAATACTACCCGCCCTGCCCGGAGCCGCACCTGACACTCGGCACCACG
CATCACTCTGACCCTTGCTTCCTCGTCGTGCTTCTCCAGGACGCCGTCGGTGGCCTCCAGGTGCTTCTCGAGGAAGACTG
CGATGGCAACAACAACAAGAAGAAGTCGTCTGCTGTGTGGGTGGATGTACCGGCGGTAGAAGGTGCGCTGGTGGTGAACG
TCGGCGACTTCCTGCAGATCGTCTCCAACGACAGGTTCAAGAGCGTGGAGCACCGTGTGGTGTCCCAGAGCGTCGGGCCT
CGCGTCTCTGTGGCAAGCTTCTTCCGAAGGCAGGACGCGGCCACGTCCACAAGAGTGCTAGCGCCAATCATCGCCGACGG
CGAGGCGCGGTACAGGAGCACGACGATGGCGGACCTGGTCCGGCACAGCAGGGCCAAGGGCCTCGACGGTAGCTCTGCGC
TGCAGCACTTGAGGCTCTGA

Alignment

ORF - retro_taes_55 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.87 %
• Parental protein coverage: 80.39 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RVELVGAVKAAAETVGFFQVVNHGVPKAAMSEILMAVQGFHEQPREAKAPYYTRDLGRPVRYWSNFDLFQ
          R.ELV.AVKAAAETVGFFQVVNHGVPKA.MSE.L.AV.GFHE.P..AKA.YY.RD.GRPVRYWS.FDLFQ
Retrocopy RAELVAAVKAAAETVGFFQVVNHGVPKAVMSEMLAAVLGFHEEPVGAKALYYGRDYGRPVRYWSIFDLFQ

Parental  SPAAQWRDTLYMQITPELPQLEEIPPACRPIALEYARLMQQLGRTLLELLSEALGLDPGHLEEDAACLER
          S.AA.WR.TL.....PELP...EIPP.CR.IA..Y.R.MQQLGRTLLELLSEALGL..GHLEEDAACLER
Retrocopy SQAANWRGTLIIDTAPELPPPKEIPPTCRSIAPKYVRMMQQLGRTLLELLSEALGLRSGHLEEDAACLER

Parental  LAGHYYPPCPEPHLTLGTTRHSDPCFLAVLLQDAVGGLQVLLEED---NNNNNNNN----NVPAVEGALV
          LAG.YYPPCPEPHLTLGTT.HSDPCFL.VLLQDAVGGLQVLLEED...NNN..........VPAVEGALV
Retrocopy LAGQYYPPCPEPHLTLGTTHHSDPCFLVVLLQDAVGGLQVLLEEDCDGNNNKKKSSAVWVDVPAVEGALV

Parental  VNVGDFLQIVSNNRFKSVEHRVVAQSAGPRVSVVCFFRRQDAATSTRVLGPIVADGEARFRSTTMAELIR
          VNVGDFLQIVSN.RFKSVEHRVV.QS.GPRVSV..FFRRQDAATSTRVL.PI.ADGEAR.RSTTMA.L.R
Retrocopy VNVGDFLQIVSNDRFKSVEHRVVSQSVGPRVSVASFFRRQDAATSTRVLAPIIADGEARYRSTTMADLVR

Parental  HNRAKGLDGTSALQHLRL
          H.RAKGLDG.SALQHLRL
Retrocopy HSRAKGLDGSSALQHLRL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_55 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_4BS_2B6A67E9F	1 retrocopy	retro_taes_55 ,