RetrogeneDB ID:

retro_taes_62

Retrocopy
location
Organism:Wheat (Triticum aestivum)
Coordinates:3B:150548384..150550820(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:TRAES3BF271100030CFD_g
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:Traes_7BL_BAF53625C
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_taes_62
ATGGGCGCACGCTCCACCTCCCTGCTTCTACTGACTTCGATGATCCATCTGCTCTCGCGCGCCTCGGCCCGCGAGTTCCT
CTCGCCAGGCTCCTCGCTCTCCACCGAGGACGGCTCCGGCATGCTCCATTCGCCAAACGGCGCCTTCACCTGCGGCTTCC
ACAACATCTCCCCAAACGCCTCCGTCTTCTCCGTCTGGTTCGCCGGCACGGCCGAGAAGACCGTCGTCTGGAGCGCAAAC
CATCTCCGCCCCGTCTACTCCCGGGGATCCCGGGCCGTGTTGCACGCTGACGGCAGCATGGTTGTGGAAGACTACGACGG
CGAGCCCGCGTGGGCAAACAACGTCAGCTCCTCATCAAAGGCCGAGCAAGCCCGGCTGCTGGACACGGGCAACCTCGTCG
TCAGCGGCCAAGGTGATGTCATTCTGTGGCAAAGCTTTGATTCTCCTACTGATACGCTGCTGCCCAATCAGAGCATCACT
GCGGCTACGAAGTTGGTGTCCGCTCATAGGTTACTTGCTCCTGGGCGCTACAGTTTCCATTTCGACGACGCGCATTTGCT
CTCGCTGTTTGATGATGAGCAGGACATCTCTTTTATCTACTGGCCAAAGCCTGATCTTGCTGCCTGGGCAAGGCAAAGAA
ACCCATTTAGTACCACCACCGTTGGGGTCCTTGATAGCTGGGGGTATTTCCTTGGGAGTGATGATTTGACTTTCAAGTCT
GCTGACTGGGGTCCTGGGGTTATGAGGAGGCTAACATTGGATTATGATGGCAACCTCAGATTATACAGTCTAGAAAACCG
GAAATGGTCGGTCACATGGATAGCATTTCAGACCTGCTTCGTACACGGTCAGTGTGGTATGAATGGAATATGTGTGTATA
CACCTAGGCCTGCTTGCGCATGCGCCCCTGGACACGAGGTCATCGACCCAAGTGACCGGAGCAAAGGCTGCCGGCCGAGG
TTCAACCTCAGTTGTGATGGGCAGGAGATGAAATTTGTGAAGCTACCCTCCACTGACTTCATAGCTTATGATCAAAGTAA
GCGCAGCTTAGTTTCCTTTGATACTTGCAAGCAGATATGCATGGATGACTGCAGTTGCAAAGGTTTCTCATACTGGCAAG
GAGGTGGATCCTGCTACCCAAAGTCATCCCTTGTTGGCGGGGTAACCAGCCCAGGCTTACCTGGTTCTATCTATCTCAAG
CTTCCAAAGACAGTACAGGTCTCAGGGTCCTCAATTCCTCAATCGCAGCCTTTTGGTCCCACATATGCTCCGAACTGTAG
TGCAAAGAACAAATATTTCACTGCAGATTTTCCGGATATACCCAAGAGCAATCAGAGTGGATCAAAGTATTTGTACTTCT
ATGGGTTCTTATCAGCAATATTCTGTGTGGAGGTAATATTTGTGGCATTAGGATGCTGGTTTATGGTGAGATTGGAGGGC
AAGCAGTTAACAGGAGTATGGCCAGCTGAGGTTGGCTATGAGATGATAACCAACCACTTCCGGAGATATACTTACAAGGA
GTTGCAGAGAGCAACTCGGAAGTTCAAGTGTCAGATTGGGAGGGGCGCATCTGGTCTTGTGTACAAGGGGATCTTGAAAG
ACAAGAGGGCAGTAGCAGTGAAAAGGTTGGCAGACATAAACCAAGGCGAAGAAGAGTTCCAACATGAACTGAGTGTGATT
GGAAAGATCTACCATATGAATCTGGTGAGGGTTTGGGGATTCTGTTCTGATGGTCCACACAGGATATTGGTTTTAGAGTA
CGTTGAAAATGGTTCTTTGGACAAAACGCTGTTTAGTGGAAAGGCCTCACAGATATTACTTGGATGGAATGAAAGATTTA
AGATTGCTCTAGGGGTGGCAAAAGGATTGGCTTATCTTCATCATGAGTGCCTGGAATGGGTTATCCACTGCGACCTCAAG
CCTGAGAACATACTGTTGGATGGGAACTTGGAGCCAAAGATCACCGACTTTGGCCTCGCAAAACTTCTGAATAGGGGTGG
ATCCAACAAAAGTGTATCGCGGATCCATGGAACTAGAGGTTATATAGCTCCTGAGTGGGTTTCTAGCCTCCCAATAACAG
CAAAGGTTGATGTCTACAGCTTTGGAGTGGTTCTCCTAGAACTACTGAAGGGGGCTCGTGTTTCAGACTGGGCGCCAAAT
GCTGATGAAGAAGTGGAAATGGTCCTTCGAAGGGTCGTTAGGATGCTTGCAGAAAATCTGATGCTGGAGGGTAGCAAACA
GTTATGGATCGATGACTTCATTGACTCCAGGTTAAACCGCCAGTTCAATGACCTGCAAGCAAGAACAATGATCAAGCTGG
CTGTTTCATGCGTAGAGGAAGACAGTAGAAAAAGACCCACAATGGAAAATGCTGTGCAGATGCTCCTTTCAGTTGATGAA
GCCAGTGGCATAATGCAGCAGTATTCTACCAACTGA

ORF - retro_taes_62 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 91.81 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMDARSTSLLLLT-LIHLLLRISAREFLLPGSSLSIEDSSGALHSPNGAFTCGFDNISPNASVFSIWFSDT
M.ARSTSLLLLT..IHLL.R.SAREFL.PGSSLS.ED.SG.LHSPNGAFTCGF.NISPNASVFS.WF..T
RetrocopyMGARSTSLLLLTSMIHLLSRASAREFLSPGSSLSTEDGSGMLHSPNGAFTCGFHNISPNASVFSVWFAGT
ParentalAEKTVVWSANHLHPVYSWGSRVMLHADGRMVVEDYSGQPAWANNVSSSSKAEQAQLLDTGNLVVRGQGDI
AEKTVVWSANHL.PVYS.GSR..LHADG.MVVEDY.G.PAWANNVSSSSKAEQA.LLDTGNLVV.GQGD.
RetrocopyAEKTVVWSANHLRPVYSRGSRAVLHADGSMVVEDYDGEPAWANNVSSSSKAEQARLLDTGNLVVSGQGDV
ParentalILWQSFDSPTDTLLPNQNITAATKLVSTHRLLVPGHYSFHFDDAHLLSLFDDQKDISFIYWPKPDLTTWA
ILWQSFDSPTDTLLPNQ.ITAATKLVS.HRLL.PG.YSFHFDDAHLLSLFDD..DISFIYWPKPDL..WA
RetrocopyILWQSFDSPTDTLLPNQSITAATKLVSAHRLLAPGRYSFHFDDAHLLSLFDDEQDISFIYWPKPDLAAWA
ParentalRQRNPFSTTTIGLLDSWGYFHGSDNLTFKSTDWGLGIMRRLTLDYDGNLRLYSLENREWSVTWIAFQTCF
RQRNPFSTTT.G.LDSWGYF.GSD.LTFKS.DWG.G.MRRLTLDYDGNLRLYSLENR.WSVTWIAFQTCF
RetrocopyRQRNPFSTTTVGVLDSWGYFLGSDDLTFKSADWGPGVMRRLTLDYDGNLRLYSLENRKWSVTWIAFQTCF
ParentalVHGLCGMNGICVYTPRPAYACAPGHEIIDPSDRSKGCRPKFNLSCHGQEMKFVKLPSTDFIAYDQSKLSL
VHG.CGMNGICVYTPRPA.ACAPGHE.IDPSDRSKGCRP.FNLSC.GQEMKFVKLPSTDFIAYDQSK.SL
RetrocopyVHGQCGMNGICVYTPRPACACAPGHEVIDPSDRSKGCRPRFNLSCDGQEMKFVKLPSTDFIAYDQSKRSL
ParentalVSFDTCKKICMNDCSCKGFSYWQGGGSCYPKSSLVGGVTSPGLPGSIYLKLPKTLQVSGSSIPQSQPFGL
VSFDTCK.ICM.DCSCKGFSYWQGGGSCYPKSSLVGGVTSPGLPGSIYLKLPKT.QVSGSSIPQSQPFG.
RetrocopyVSFDTCKQICMDDCSCKGFSYWQGGGSCYPKSSLVGGVTSPGLPGSIYLKLPKTVQVSGSSIPQSQPFGP
ParentalRYAPNCSANNKYFTADFLDIPKSSRSGSKYLYFYGFLSAIFCVEVMFVALGCWFMLRLEGKQLTGVWPAE
.YAPNCSA.NKYFTADF.DIPKS..SGSKYLYFYGFLSAIFCVEV.FVALGCWFM.RLEGKQLTGVWPAE
RetrocopyTYAPNCSAKNKYFTADFPDIPKSNQSGSKYLYFYGFLSAIFCVEVIFVALGCWFMVRLEGKQLTGVWPAE
ParentalVGYEMITNHFRRYTYKELQRATRKFKYQIGRGASGLVYRGVLKDKRAVAVKRLADINQGEEEFQHELSVI
VGYEMITNHFRRYTYKELQRATRKFK.QIGRGASGLVY.G.LKDKRAVAVKRLADINQGEEEFQHELSVI
RetrocopyVGYEMITNHFRRYTYKELQRATRKFKCQIGRGASGLVYKGILKDKRAVAVKRLADINQGEEEFQHELSVI
ParentalGKIYHMNLVRVWGFCSDGPHRILVLEYVENGSLDKTLFSGKGSQILLEWNERFKIALGVAKGLAYLHHEC
GKIYHMNLVRVWGFCSDGPHRILVLEYVENGSLDKTLFSGK.SQILL.WNERFKIALGVAKGLAYLHHEC
RetrocopyGKIYHMNLVRVWGFCSDGPHRILVLEYVENGSLDKTLFSGKASQILLGWNERFKIALGVAKGLAYLHHEC
ParentalLEWVIHCDLKPENILLDENLEPKITDFGLAKLLNRGGSNKKVSRIHGTRGYIAPEWVSSLPITAKVDVYS
LEWVIHCDLKPENILLD.NLEPKITDFGLAKLLNRGGSNK.VSRIHGTRGYIAPEWVSSLPITAKVDVYS
RetrocopyLEWVIHCDLKPENILLDGNLEPKITDFGLAKLLNRGGSNKSVSRIHGTRGYIAPEWVSSLPITAKVDVYS
ParentalFGVVLLELLKGARVSDWASNADEEVEMVLRRVVRMLAENLMLEGSKQLWIADFIDSRLNRQFNNLQARTM
FGVVLLELLKGARVSDWA.NADEEVEMVLRRVVRMLAENLMLEGSKQLWI.DFIDSRLNRQFN.LQARTM
RetrocopyFGVVLLELLKGARVSDWAPNADEEVEMVLRRVVRMLAENLMLEGSKQLWIDDFIDSRLNRQFNDLQARTM
ParentalIKLAVSCVEEDSRKRPTMENAVQMLLSVDEASGIMQ
IKLAVSCVEEDSRKRPTMENAVQMLLSVDEASGIMQ
RetrocopyIKLAVSCVEEDSRKRPTMENAVQMLLSVDEASGIMQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Triticum aestivum was not studied using ChIP-Seq data.

EST - click to see more details

Triticum aestivum was not studied using EST data.

TSS - click to see more details

Triticum aestivum was not studied using FANTOM5 data.

Lab - click to see more details

retro_taes_62 was not experimentally validated.

Retrocopy orthology:
Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Triticum aestivum Traes_7BL_BAF53625C 1 retrocopy
retro_taes_62 ,


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