RetrogeneDB ID: retro_taes_66

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: 5B:207214525..207216223(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: Traes_5BL_EE25CD53E
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_1BS_9E2358A6E
• Aliases: None
• Description: None

Sequence

>retro_taes_66
ATGGACAGCTTGCCGAAGCGCGACGCCAACCACGTGCCGCTGAGCCCGGTCACCTTCCTGCCACGGGCAGCGGCCGTGTA
CGCCGACCGCACCTCCGTCGTCTGCGGTGGCACCGCCTTCACCTGGCGCCAGACGCACCACCGCTGCGTCCGCCTGTCCG
CTGCGCTGCAGGCGCTCGGCGTCGCCAGGAACGACGTCGTCTCCGTGCTCGCGCCCAACACCCCCGCGCTATACGAGATG
CACTTCGCGGTGCCCATGGCTGGGGGCGTGATCAACGCCATCAACACCCGCCTCGACGCCGCCGGCGTCGCCGCCATTCT
TCGCCACGCCGCCCCCAAGCTCATGTTCGTCGACTACCAGTACATCCGTGTCGCCACCGACGCGTTCAAGGGTGTCGCCT
CGTCGTCCCTGCCGCTGCTGGTGGTCATCGACGACATCGACGCGCCTACGGGGGCGCGTGTTGGGGAGCTGGAGTACGAG
GGCCTGGTTGCGCGCGGCGACCCGGCCAGGCACCCGCCGCGCGAGGTGGTGGACGAGTGGGACGCCGTCGCGCTCAACTA
CACCTCCGGCACCACGTCGGCTCCCAAGGGCGTCGTGTACAGCCATCGGGGCGCCTACCTCAGCACGGTCGGGCTGCTGC
TGCAGTGGGGCGTGGGCCACGAGCCGGTCTACCTCTGGTCGCTCCCCATGTTCCACTGCAACGGCTGGACCTTCACGTGG
GGCGTGGCAGCGCGTGGTGGCGCCAACGTCTGCGTCCGCGCGCCGACGGCGGACGCCATGTACTCCGCCATCGTCGACCA
CGGCGTCACTCACATGTGCGTCGCGCCCGTGCTCTTCAACGTCCTCCTCGACGCCCACCGTGACCCGCTGCCCCGCGCCG
TCGAGGTGCTCACGGGCGGCGCGCCGCCTCCCGCCGCGCTGCTCGAGCGCGTCGAGCGCCTCGGGTTCCATGTCACGCAC
GCCTACGGCATGACCGAAGCGACCGGCCCGGCCATGGTCTGCGAGTGGCGGGAGCGGTGGGACGCGCTGCCAGCGCCGGA
GCGTGCTGCGCTCAAGGCGCGGCAGGGCGTGAGCGCGATCTCCCTCGCCGGGGCCGACGTCAAGAACCTCAAGACCATGG
CGAGCGTGCCCCGGGACGGCACCACGCTCGGCGAGATCGTGCTGCGCGGGAGCAGCGTGATGAAGGGGTACTACAAGAAC
CCGGAGGCCACGGACGCGGCGTTCCGCGACGGGTGGTTCCTGACGGGCGACGTGGGCGTGGTGCACCCGGATGGGTACGT
GGAGATCAAGGACCGGTCCAAGGACGTGATCATCTCCGGCGGCGAGAACATCAGCAGCGTGGAGGTGGAGGCGGCGCTGT
ACGGCCACCCGGCGGTGCAGGAGGCGGCGGTGGTCGCCATGCCGCACCCACACTGGGGCGAGACGCCGTGCGCCTTCGTC
GCGCTGAAGAAGGAGTTCGACTCCGGCGCCGGCGAGGTGAGCGAGGAGGAGCTGGTGGCCTTCTGCCGGAGTAAGATAGC
GCACTTCATGGTGCCGAGGAAGGTGGTGTTCGTCCACGAGCTGCCCAAGAACGCCACGGGCAAGGTGCAGAAGCTCGCGC
TGCGCGAGAGGGCGCGCGGGCTCAGGCCCAGAGATTCCGACAAGAAGAAGCCCGACCCCACCCGGCCCGCCACGATGACC
GCATTGTCCAGACTTTGA

Alignment

ORF - retro_taes_66 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.55 %
• Parental protein coverage: 96.28 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MDSLPKRDANYVPLSPITFLQRAASVYADRTSLVYGNTIFTWRQTYERCCRLAAALQQLGVMKKDVVSVL
          MDSLPKRDAN.VPLSP.TFL.RAA.VYADRTS.V.G.T.FTWRQT..RC.RL.AALQ.LGV...DVVSVL
Retrocopy MDSLPKRDANHVPLSPVTFLPRAAAVYADRTSVVCGGTAFTWRQTHHRCVRLSAALQALGVARNDVVSVL

Parental  APNTPALYEMHFAVPMAGAVLNAINTRLDATAAAGIIKHADPKLLFVDYQYMCLATESLRDGEAAGSISP
          APNTPALYEMHFAVPMAG.V.NAINTRLDA...A.I..HA.PKL.FVDYQY...AT.....G.A..S..P
Retrocopy APNTPALYEMHFAVPMAGGVINAINTRLDAAGVAAILRHAAPKLMFVDYQYIRVATDAFK-GVASSSL-P

Parental  LLVVIDDLNKPEETRIGELHYEQLVERGDPEQRPPRSVDDEWDAITLNYTSGTTSSALKGVVYSHRGAYL
          LLVVIDD...P...R.GEL.YE.LV.RGDP...PPR.V.DEWDA..LNYTSGTTS.A.KGVVYSHRGAYL
Retrocopy LLVVIDDIDAPTGARVGELEYEGLVARGDPARHPPREVVDEWDAVALNYTSGTTS-APKGVVYSHRGAYL

Parental  STVGLLLQWGVGSEPVYLWSLPMFHCNGWTLTWGVAARGGVNVCIRTPAADDMYAALSAHGVTHMCGAPV
          STVGLLLQWGVG.EPVYLWSLPMFHCNGWT.TWGVAARGG.NVC.R.P.AD.MY.A...HGVTHMC.APV
Retrocopy STVGLLLQWGVGHEPVYLWSLPMFHCNGWTFTWGVAARGGANVCVRAPTADAMYSAIVDHGVTHMCVAPV

Parental  LLNILVEARREPLLHAVEVLTGGAPPPAALLERVERLGFNVTHAYGMTEATGSAMVCEWRERWNALPTST
          L.N.L..A.R.PL..AVEVLTGGAPPPAALLERVERLGF.VTHAYGMTEATG.AMVCEWRERW.ALP...
Retrocopy LFNVLLDAHRDPLPRAVEVLTGGAPPPAALLERVERLGFHVTHAYGMTEATGPAMVCEWRERWDALPAPE

Parental  RARLKARQGVSALSLADAAVVNNIDTMQSVPRDGTALGEIMLRGNSIMKEYYKDTAATASAFRGGWFLTG
          RA.LKARQGVSA.SLA..A.V.N..TM.SVPRDGT.LGEI.LRG.S.MK.YYK...AT..AFR.GWFLTG
Retrocopy RAALKARQGVSAISLA-GADVKNLKTMASVPRDGTTLGEIVLRGSSVMKGYYKNPEATDAAFRDGWFLTG

Parental  DVGVVHPDGYVEIKDRSKDVIISGGENISSVDVEMALYQHHAVREAAVVAMPHPHWGETPCAFVALEPGF
          DVGVVHPDGYVEIKDRSKDVIISGGENISSV.VE.ALY.H.AV.EAAVVAMPHPHWGETPCAFVAL...F
Retrocopy DVGVVHPDGYVEIKDRSKDVIISGGENISSVEVEAALYGHPAVQEAAVVAMPHPHWGETPCAFVALKKEF

Parental  -SCLGEVTEEDIILFCRDKMPHFMVPRKVVFVDKLPTNSTGKVRKIELRQRLHG
          .S..GEV.EE....FCR.K..HFMVPRKVVFV..LP.N.TGKV.K..LR.R..G
Retrocopy DSGAGEVSEEELVAFCRSKIAHFMVPRKVVFVHELPKNATGKVQKLALRERARG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_66 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_1BS_9E2358A6E	1 retrocopy	retro_taes_66 ,