RetrogeneDB ID: retro_taes_7

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: 5B:246981875..246983258(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: Traes_5BL_FD7E78F1A
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_4AL_CC08ED5AD1
• Aliases: None
• Description: None

Sequence

>retro_taes_7
ATGGCTGGCGTTCGGGCACATGCTCTCGTTCCTCGAGCTGTCCAAGGCCTGGCGGCTCGTGGCCACGCCGTCGCCTTCCT
CTCCACGCCGCGGAACCTCGCCAGGCTCCCACCCGTGCCGCCGCACCTGTCCCCTCGCCTTCGCTTCGTGCCGCTGCCGC
TGCCGCGCGTGGACGGGCTGCCGGACGGCGCCGAGTCCACGGCCGACGTGCCGCCCGAGAAGATCGAGCTCGTCAAGAAG
GCCATGGACGGGCTCGCGGCCCCGCTAGCCGCGTTCCTCGCGGACGCCGTCGCTGCTGGCCGGAGACCCGACTGGATCGT
CCATGACTTCTGCCACCACTGGGTCCCGCCCATCGCCGGCGGGCACGGTGTGCCGTGCGCCGCGTTCATGACCGTCTATG
CCGCCTTCGTGGCCTTCCTGGGGCCGCGGTGGGCGAACGTCGAGCACCCGCGCGCTGCGACGGAGGACTTCGCGGTCGTG
CCCAGGTGGATCCCGTTCCCGTCCACGATCGCCTGCCGACGCCGCAGCGAGGCCGAATCGATCGCCGCCCTCTTCCGCGC
CAACGCGTCCGGCGTGTCCGACATGGACCGCGCGTGGCAGCTGTTCGAGTGCTGCCGCCTGGCCATCTACCGGAGCTGCG
ACGAGGTCGAGCCCGGAATGTTCGCCCTCCTCACCGACCTCTTGCAGAAGCCCGCCATCCCCGCCGGGATCCTGCTACCT
CCCGTTATCGCCGACGAGGACGGTGACCGTCCTGAGACCCTGCGTTGGCTCGACGACCAGCCACCCAAGTCCGTCATCTA
CGTCGCGCTGGGGAGCGAGGCGCCGCTGACTCCAGGTATCCTGCACGAGCTCGCGCTCGGGCTGGAGCTCGCCGGGGTGC
GCTTCCTATGGGCTGTACGCAATCCGGCCGGGATGTTCAGCGCCGCGAACGACGCCATCAAGGACGAACTGCTGCCCGCC
GGGTTCGAGGAGCGGACGCGGGGGCGCGGGCTGGTGCGCACGGGGTGGGTGCCGCAGGTGGCGGCGCTGGCGCACGGCGC
GACGGGCGCGTTCCTGACGCACTGCGGGTGGGGCTCCACCATCGAGAGCTTCGCCTGCGGGCACCCGTTGGTGTTGCTCC
CGTTCGTGCTCGACCAGCCCCTCGTCGCGCGCGCCATGGCAGAGAAGGGGGTCGGCGTGGAGGTGGCGAGGGACGAGACC
GACGGCTCGTTCGACAGGGACGGCGTGGCGGCGGCGGTGCGGCGCGTCATGGTAGACGAGGAAGGGAAGGCGCTCGCGAG
CAACGCCATGAAGCTGCGAGAGCTTCTCAAGGACCAGGGCCGGCAGGAGACGTACATTGATGATCTTGTCGAGCACCTGA
GGCGCTACAGAGGCCGCTGCTAG

Alignment

ORF - retro_taes_7 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.71 %
• Parental protein coverage: 52.54 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LAAKGHAVAFVSTPRNLARLPPMPAHLSARIRFVALPLPAVEGLPEGAEATSDLPPDKVELLKKAMDGLA
          LAA.GHAVAF.STPRNLARLPP.P.HLS.R.RFV.LPLP.V.GLP.GAE.T.D.PP.K.EL.KKAMDGLA
Retrocopy LAARGHAVAFLSTPRNLARLPPVPPHLSPRLRFVPLPLPRVDGLPDGAESTADVPPEKIELVKKAMDGLA

Parental  GPLASFLADAVAAGRRPDWVILDFCHHWVPPVADQHKVPCAAFLIFHAACMAFIGPRWANDDAYPRTKPE
          .PLA.FLADAVAAGRRPDW...DFCHHWVPP.A..H.VPCAAF....AA..AF.GPRWAN....PR...E
Retrocopy APLAAFLADAVAAGRRPDWIVHDFCHHWVPPIAGGHGVPCAAFMTVYAAFVAFLGPRWANVE-HPRAATE

Parental  DFTVPPKWIPFPSTTSLLHHEARRMLADNFGENASGRSDTDRLWDVFERCCLTIHRSCRELEPRMFTLLS
          DF.V.P.WIPFPST............A..F..NASG.SD.DR.W..FE.C.L.I.RSC.E.EP.MF.LL.
Retrocopy DFAVVPRWIPFPSTIACRRRSEAESIAALFRANASGVSDMDRAWQLFECCRLAIYRSCDEVEPGMFALLT

Parental  DLLRKPAVPAGILLPEAVEDRDQDHRQS
          DLL.KPA.PAGILLP....D.D.D....
Retrocopy DLLQKPAIPAGILLPPVIADEDGDRPET

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_7 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_4AL_CC08ED5AD1	1 retrocopy	retro_taes_7 ,