RetrogeneDB ID: retro_taes_78

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: 2B:304098635..304099592(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: Traes_2BL_52480A403
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_7DS_9FEC6C6E1
• Aliases: None
• Description: None

Sequence

>retro_taes_78
ATGGCGGCGGCAGTGCCGGTCTGGTTCATCTCCCTGGCCGGACTCGGCGCCCTGTACCTGTCCGCTGCCTGCATCCGTCT
CCTCGCCCACCTCGCCCTCTGCCTCCGCCGGCCCATCGACCTCCGCCGCCACTACGGTTCGTGGGCGGTCGTTACCGGCC
CAACCACAGGGCTAGGCCGATCCATGGCCATGGAGCTCGCCCGCCGTGGCATCAGCCTCGTCCTCCTCGACCTCGACGCG
GCCAACCTGCAATCCGTCTCGGCTGCCCTCCACGAGGCCCACCCCGGAGTGGAGACCAAGACCGTAGTGTTCGACCTCTC
TCTCGTCGGATCCGCCGCCGGCGACGAGGCGATGCGGCAGCTCAAAGAGGCCACAGTGGGGCTGGACGTGGGGCTACTGG
TGAACAACGCCGCCGTGAATCGGCCCGGCGCGATGTACGTGCACGAGGCGGACGTGGAGCGGCTGGCAAGGATGGTGCTG
GTGAACTTGATGGCGCTCACAGAGGTGACGGCGGCGGTTCTGCCGGGGATGCTGGAGCGGGGAAGGGGCGCCATTGTCAA
CGTCGGGTCCGGGTCCACGGTGGCCGTGCCTTCCTTCCCGCTCTACACCGTCTACAGCGCCACAAAACGGTACGTGCAGC
ACCTGACGCGGTGCCTCAGCGTGGAGTACAAGCACAGGGGCATCGACGTGCAGTGCCAGGTCCCGTTCTACGTGCACACC
GGCATGCTGTCGCCGGCAATAGAGGCGACCATGACATTCCCGGCGTTCGTGGCGACCGCCGACGCGTACGCCCGGGACGC
GGCGCGGTGGATCGGCCACGGCGTGCTCTGCGTGCCCGACGTGTCCCAGCAGCTGCAGTGGTTCCTCGCCGGTCTTGTCC
CCAACGCCGTCCACGACTGGTACCGCCTCCGGCAGCATCTAAAGCACAGGGCCATCCTCCGGCCGAAGCTCGCGTGA

Alignment

ORF - retro_taes_78 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 60. %
• Parental protein coverage: 91.39 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  WFISLATLGALYSAAVALRLLSHLALLLRRPTDLRRRYGAWAVVTGPTSGIGESLALELARRGLNLVIVG
          WFISLA.LGALY..A...RLL.HLAL.LRRP.DLRR.YG.WAVVTGPT.G.G.S.A.ELARRG..LV...
Retrocopy WFISLAGLGALYLSAACIRLLAHLALCLRRPIDLRRHYGSWAVVTGPTTGLGRSMAMELARRGISLVLLD

Parental  RDPAKLQDISETISKTR-AVQTKTVVFDLSLVATPEGDEAMRRLXEVE-GLDVGLLVNNAGVAKPCAVYL
          .D.A.LQ..S.........V.TKTVVFDLSLV....GDEAMR.L.E...GLDVGLLVNNA.V..P.A.Y.
Retrocopy LDAANLQSVSAALHEAHPGVETKTVVFDLSLVGSAAGDEAMRQLKEATVGLDVGLLVNNAAVNRPGAMYV

Parental  HEMDVEAWVRMIRVNLWALTEVTAAVLPGMVQRGRGAVVNIGSGSSEAIPSFPLYSVYAASKRYVAQFSR
          HE.DVE...RM..VNL.ALTEVTAAVLPGM..RGRGA.VN.GSGS..A.PSFPLY.VY.A.KRYV....R
Retrocopy HEADVERLARMVLVNLMALTEVTAAVLPGMLERGRGAIVNVGSGSTVAVPSFPLYTVYSATKRYVQHLTR

Parental  SLYVEYRSKGIDVQCQAPLFVETKMTSRAAKRGKRGPLSRLVMPTSDAYARAAARWIGHGPLCMPNLGHR
          .L.VEY...GIDVQCQ.P..V.T.M.S.A.......P.......T.DAYAR.AARWIGHG.LC.P.....
Retrocopy CLSVEYKHRGIDVQCQVPFYVHTGMLSPAIEATMTFP---AFVATADAYARDAARWIGHGVLCVPDVSQQ

Parental  LQWYLCLVAPDWLLDALRLRENLQQRAVLQ
          LQW.L....P....D..RLR..L..RA.L.
Retrocopy LQWFLAGLVPNAVHDWYRLRQHLKHRAILR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_78 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_7DS_9FEC6C6E1	1 retrocopy	retro_taes_78 ,