RetrogeneDB ID: | retro_taes_84 | ||
Retrocopy location | Organism: | Wheat (Triticum aestivum) | |
| Coordinates: | IWGSC_CSS_4DS_scaff_1921883:2..422(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | Traes_4DS_571A2B4BC | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | Traes_6AL_CDC715B50 | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_taes_84
ATGGCACTGAGAATGTGGGCTTCTTCCACAGCAAACGCTCTCAAGCTCTCCTCTTCTGCTTCCAAATCCCATCTCCTTCC
AGCTTTCTCCATCTCCAGATGCTTCTCCTCAGTGTTGGAAGGACTCAAGTATGCAAATTCACATGAGTGGGTCAAACATG
AAGGCTCAGTGGCTACCATTGGCATCAGTGACCATGCCCAGGACCATTTAGGAGAAGTTGTGTTTGTGGAGCTGCCAGAA
GAGAAAAGTTCAGTGAGCAAAGAAAAAAACTTTGGAGCAGTGGAGAGTGTAAAGGCCACAAGTGAGATTATATCTCCAAT
CTCTGGTGAAGTCATTGAGGTTAACACAAAGCTCGCCGATTCACCTGGTTTGATTAACTCAAGCCCCTATGAAGAAGGTT
GGATGATAAAGGTGAAACCA
ORF - retro_taes_84 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 73.57 % |
| Parental protein coverage: | 84.76 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MALRLWASSAANALKISSSGARA-AAPAYSISRYFSTVIDGLKYTSSHEWVKNDGSVATIGISDHAQGHL |
| MALR.WASS.ANALK.SSS.......PA.SISR.FS.V..GLKY..SHEWVK..GSVATIGISDHAQ.HL | |
| Retrocopy | MALRMWASSTANALKLSSSASKSHLLPAFSISRCFSSVLEGLKYANSHEWVKHEGSVATIGISDHAQDHL |
| Parental | GEVVFVELPEAGTKVSQGGAFGNVESVKATSDVNSPISGEVVEVNSKLSETPGLINSSPYEEGWMIKVKP |
| GEVVFVELPE....VS....FG.VESVKATS...SPISGEV.EVN.KL...PGLINSSPYEEGWMIKVKP | |
| Retrocopy | GEVVFVELPEEKSSVSKEKNFGAVESVKATSEIISPISGEVIEVNTKLADSPGLINSSPYEEGWMIKVKP |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Triticum aestivum was not studied using RNA-Seq expression data.
Triticum aestivum was not studied using ChIP-Seq data.
Triticum aestivum was not studied using EST data.
Triticum aestivum was not studied using FANTOM5 data.
retro_taes_84 was not experimentally validated.
Retrocopy orthology:
Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Triticum aestivum | Traes_6AL_CDC715B50 | 1 retrocopy |
retro_taes_84 ,
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