RetrogeneDB ID: retro_taes_90

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: 3B:680079593..680080703(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: TRAES3BF024300160CFD_g
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: TRAES3BF024300050CFD_g
• Aliases: None
• Description: None

Sequence

>retro_taes_90
ATGTTGGGCAGTCCGAGAAAGCAGCACGGCGGCGGCGGCGGCGGAAGCCACTCGGCCTCGTTCCTCCTCGGGGCTCTCCT
CCCCACGCTCCTGCTCTTCTTCCTCGCCTCCGACCGGGTCGGCGAGCGGCTGACCAGCATCTCCACCTACACCTTGGGGA
ACAACAATAATGGATCGTCATCAGCTCATCGTGAGCAGATGACCCATGATGCCAACCTCACGGACACGGACACGACGGAG
GAGAGGGTGTTCCCGGGGCTGGCGGAGCTGCTGCCGAGGGTGGCCACGGACGACGGGACGGTGATCATCACGTCGGTGAA
CGAGGCGTGGTCGCGCCCGGGCTCCCTCCTCGACCTCTTCCGCGCGGGGTTCAACAACGGCGAGGGGATCGCGCACCTCC
TCAACCACACCCTCATCGTGGCCGTCGACCCCGGCGCGCTGGCGCACTGCGAGGCCGTGCACCCGCACTGCTACCTCCTC
GAGGTCACCTCCGCCAACGTCAGCTCCGCCAACCGCTTCATGACCAAGAGCTACTTCGAGCTCGTCTGGGCCAAGCTGGA
GCTCCAGCAGCGCGTCCTCCAGCTCGGCTACAGCTACCTCTTCACCGACGTGGACATCATGTGGCTGCGCAACCCGTTCC
GGTACATCAGCCTCTACGCCGACATGGCCGTCTCCACCGACCGGTTCAACGGCGACGCCGAGGCCCTGACGAACGCGCCC
AACACGGGCTTCTACTACGTCAAGTCCACCAACCGCACGGTGGAGATGCTGAGGCGGTGGCGGGCGGCGAGGTCGCGGTT
CCCGCCGACCCACGACCAGGCGGTGTTCGACGAGATTAAGGGCGAGCTGGCAGGCGGCGAGCTGCACATCAGGTTCGTGT
TCCTCGAGACGGCGCTCTTCGACGGCTTCTGCCAGCTCCACGACGAGATGGACCGGGTGTGCACCATGCACGCCAACTGC
TGCATCGGGCTCGAGAACAAGGTGCACGACCTCACCAACATGGCCGCCGACTGGAAGAACTACACGAGCCTAGCGCCGGC
GGAGAGAAGGGGCAGCGGGCGTAGGTGGACGGCCCCCGACCAGTGCGAGGAGTCCATGAGGCAGCGCTGA

Alignment

ORF - retro_taes_90 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.92 %
• Parental protein coverage: 99.19 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MGSLRSTQHDCGGGVGHSVSFLLGALLPTVLLFFLASDRVDEQLSSISTFRFGNGSAAHQLTSHAANLST
          .GS.R..QH..GGG..HS.SFLLGALLPT.LLFFLASDRV.E.L.SIST...GN.........H......
Retrocopy LGSPRK-QHGGGGGGSHSASFLLGALLPTLLLFFLASDRVGERLTSISTYTLGNNNNGSS-SAHREQMTH

Parental  DGDAKAWPQAQEESFPGLAELLPRVAMDDGTVIITSVNEAFARPGSLLDLFRGSFRDGEGIAHLLNHTLI
          D..........E..FPGLAELLPRVA.DDGTVIITSVNEA..RPGSLLDLFR..F..GEGIAHLLNHTLI
Retrocopy DANLTDTDTTEERVFPGLAELLPRVATDDGTVIITSVNEAWSRPGSLLDLFRAGFNNGEGIAHLLNHTLI

Parental  VAADPGALALCKAVHPHCYLLQVMAAGVSSANGFMTRSYLELVWSKLTFQHRVLQLGYNYLYTDLDVMWL
          VA.DPGALA.C.AVHPHCYLL.V..A.VSSAN.FMT.SY.ELVW.KL..Q.RVLQLGY.YL.TD.D.MWL
Retrocopy VAVDPGALAHCEAVHPHCYLLEVTSANVSSANRFMTKSYFELVWAKLELQQRVLQLGYSYLFTDVDIMWL

Parental  RNPFRHISLYADMAVSTDRFNGNAEDLTNAPNTGFYYVRSTNRTVEMLRRWRAARSRFRPLAHDQEVFEA
          RNPFR.ISLYADMAVSTDRFNG.AE.LTNAPNTGFYYV.STNRTVEMLRRWRAARSRF.P..HDQ.VF..
Retrocopy RNPFRYISLYADMAVSTDRFNGDAEALTNAPNTGFYYVKSTNRTVEMLRRWRAARSRFPP-THDQAVFDE

Parental  IKGEFVGGELRIKLVFLDTALFDGFCEYHGEMDRVCTMHANCCLRLATKMHDLRNVVADWKRYSSLTPPE
          IKGE..GGEL.I..VFL.TALFDGFC..H.EMDRVCTMHANCC..L..K.HDL.N..ADWK.Y.SL.P.E
Retrocopy IKGELAGGELHIRFVFLETALFDGFCQLHDEMDRVCTMHANCCIGLENKVHDLTNMAADWKNYTSLAPAE

Parental  KMSSKLRWTYPAKCAATMK
          ...S..RWT.P..C...M.
Retrocopy RRGSGRRWTAPDQCEESMR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_90 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	TRAES3BF024300050CFD_g	1 retrocopy	retro_taes_90 ,