RetrogeneDB ID: retro_taes_92

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: IWGSC_CSS_4DL_scaff_14333216:243..1194(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: Traes_4DL_8B9F13EA5
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_4DL_350C0974E
• Aliases: None
• Description: None

Sequence

>retro_taes_92
ATGGCGGGCTCGTCTTCGGCGTCGGGCGCTGTCGACGTCGACCGGATAATCACCAAGCTGCTCGAGGTGCGCGGCGCGCG
CCCTGGCAAGCAGGTGAACCTGCTCGAGTCAGAGATCCGAGCACTCTGCACGACCGCCCGCGAGGTCTTTCTGAAGCAGC
CGACGCTGCTCGAGCTGGAGGCGCCAATCAAGATCTGCGGCGACCTGCACGGGCAGTACTTTGACCTGCTGCGCCTCTTT
GAGTACGGCGGCTTCCCTCCCGACTCAAACTACCTCTTTCTGGGTGACTACGTGGACCGCGGGAAGCAGTCGCTCGAGAC
CATCTGCCTGCTGCTCGCGTACAAGATCAAGTACCCGGAGAACTTCTTCCTGCTGCGCGGCAACCACGAGTGCGCCTCGA
TCAACCGCATCTACGGCTTCTACGACGAGTGCAAGCGGCGCTTCTCGGTGAAGCTGTGGAAGACCTTCACAGACTGCTTC
AACTGCTTGCCCGTCGCCGCCGTCGTGGACGAGAAGATCCTGTGCATGCACGGCGGCCTCTCGCCCGACCTCAAGCAGCT
GAGCCAGATCGCGCGCCTCGAGCGGCCGACGGACGTGCCGGACCAGGGCCTGCTCTGCGACCTGCTCTGGTCCGACCCGG
ACAAGGACGTGACGGGGTGGGGCGAGAACGACCGCGGCGTCTCGTACACGTTTGGCGCCGACGTCGTCTCCGACTTTCTC
GACGAGCACAACCTCGACCTCGTCTGCCGCGCGCACCAGGTGGTTGAGGACGGCTACGAGTTCTTTGCAAAGCGCCAGCT
GGTGACCGTCTTCTCGGCGCCAAACTATTGCGGCGAGTTTGACAATGCGGGCGCGATGATGTCGGTGGACGACACTCTGA
TGTGCTCCTTCCAGATCCTCAAACCCGCCGAGAAGCGGCCGAAGGGGCAGGCGGCCGCCGCCTCGAGCGGC

Alignment

ORF - retro_taes_92 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.65 %
• Parental protein coverage: 96.57 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GQGGGMDAALLDDIIRRLLEVRTARPGKQVQLSESEIRQLCTASRDIFLTQPNLLELEAPIKICGDIHGQ
          G......A...D.II..LLEVR.ARPGKQV.L.ESEIR.LCT..R..FL.QP.LLELEAPIKICGD.HGQ
Retrocopy GSSSASGAVDVDRIITKLLEVRGARPGKQVNLLESEIRALCTTAREVFLKQPTLLELEAPIKICGDLHGQ

Parental  YSDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYD
          Y.DLLRLFEYGGFPP..NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYD
Retrocopy YFDLLRLFEYGGFPPDSNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYD

Parental  ECKRRFNVRLWKVFTDCFNCLPVAALIDDKILCMHGGLSPDLGHLDEIKNLPRPTDVPDTGLLCDLLWSD
          ECKRRF.V.LWK.FTDCFNCLPVAA..D.KILCMHGGLSPDL..L..I..L.RPTDVPD.GLLCDLLWSD
Retrocopy ECKRRFSVKLWKTFTDCFNCLPVAAVVDEKILCMHGGLSPDLKQLSQIARLERPTDVPDQGLLCDLLWSD

Parental  PGKDVQGWGMNDRGVSYTFGHDKVTEFLLKHDLDLICRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDN
          P.KDV.GWG.NDRGVSYTFG.D.V..FL..H.LDL.CRAHQVVEDGYEFFA.RQLVT.FSAPNYCGEFDN
Retrocopy PDKDVTGWGENDRGVSYTFGADVVSDFLDEHNLDLVCRAHQVVEDGYEFFAKRQLVTVFSAPNYCGEFDN

Parental  AGAMMSVDETLMCSFQILKPAERKIKFMAS
          AGAMMSVD.TLMCSFQILKPAE...K..A.
Retrocopy AGAMMSVDDTLMCSFQILKPAEKRPKGQAA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_92 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_4DL_350C0974E	1 retrocopy	retro_taes_92 ,