RetrogeneDB ID: retro_taes_93

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: IWGSC_CSS_4DS_scaff_2012809:0..285(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: Traes_4DS_E53B60D23
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_5DL_11F618A4D
• Aliases: None
• Description: None

Sequence

>retro_taes_93
ATGACTTTCAAGCGCAGGAACGGTGGCAGGAACAAGCACAACCGTGGTCATGTGAAGCCCATCAGGTGTTCCAACTGCGG
GAAATGCTGTCCCAAGGATAAGGCTATCAAGAGGTTCATCGTCAGGAACATCGTTGAGCAGGCTGCCATCAGAGATGTTC
AAGAAGCCAGTGTCTACGATGGTTACACTCTTCCCAAGTTGTACGCCAAGACGCAGTACTGTGTCTCATGTGCTATCCAC
TCTCACGTTGTGAGAGTCCGTTCCCGCACCAACCGTAGGGTTCGT

Alignment

ORF - retro_taes_93 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.21 %
• Parental protein coverage: 65.97 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVHDGYVLPKLYAK
          MTFKRRNGGRNKH.RGHVK.IRCSNC.KCCPKDKAIKRF.VRNIVEQAA.RDVQEA.V.DGY.LPKLYAK
Retrocopy MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYDGYTLPKLYAK

Parental  VHHCVSCAIHAHIVRVRSRENRRNR
          ...CVSCAIH.H.VRVRSR.NRR.R
Retrocopy TQYCVSCAIHSHVVRVRSRTNRRVR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_93 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_5DL_11F618A4D	1 retrocopy	retro_taes_93 ,