RetrogeneDB ID: | retro_taes_93 | ||
Retrocopy location | Organism: | Wheat (Triticum aestivum) | |
| Coordinates: | IWGSC_CSS_4DS_scaff_2012809:0..285(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | Traes_4DS_E53B60D23 | |
| Aliases: | None | ||
| Status: | KNOWN_PROTEIN_CODING | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | None | ||
| Ensembl ID: | Traes_5DL_11F618A4D | ||
| Aliases: | None | ||
| Description: | None |
Retrocopy-Parental alignment summary:
>retro_taes_93
ATGACTTTCAAGCGCAGGAACGGTGGCAGGAACAAGCACAACCGTGGTCATGTGAAGCCCATCAGGTGTTCCAACTGCGG
GAAATGCTGTCCCAAGGATAAGGCTATCAAGAGGTTCATCGTCAGGAACATCGTTGAGCAGGCTGCCATCAGAGATGTTC
AAGAAGCCAGTGTCTACGATGGTTACACTCTTCCCAAGTTGTACGCCAAGACGCAGTACTGTGTCTCATGTGCTATCCAC
TCTCACGTTGTGAGAGTCCGTTCCCGCACCAACCGTAGGGTTCGT
ORF - retro_taes_93 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 84.21 % |
| Parental protein coverage: | 65.97 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVHDGYVLPKLYAK |
| MTFKRRNGGRNKH.RGHVK.IRCSNC.KCCPKDKAIKRF.VRNIVEQAA.RDVQEA.V.DGY.LPKLYAK | |
| Retrocopy | MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYDGYTLPKLYAK |
| Parental | VHHCVSCAIHAHIVRVRSRENRRNR |
| ...CVSCAIH.H.VRVRSR.NRR.R | |
| Retrocopy | TQYCVSCAIHSHVVRVRSRTNRRVR |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Triticum aestivum was not studied using RNA-Seq expression data.
Triticum aestivum was not studied using ChIP-Seq data.
Triticum aestivum was not studied using EST data.
Triticum aestivum was not studied using FANTOM5 data.
retro_taes_93 was not experimentally validated.
Retrocopy orthology:
Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Triticum aestivum | Traes_5DL_11F618A4D | 1 retrocopy |
retro_taes_93 ,
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