RetrogeneDB ID: retro_taes_95

Retrocopy location

• Organism: Wheat (Triticum aestivum)
• Coordinates: 6A:8359426..8359972(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: Traes_6AS_F47C7B79C
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: Traes_2AS_3EC4D7685
• Aliases: None
• Description: None

Sequence

>retro_taes_95
ATGTGTCGCTATTTGATACTTCCTCGCTGTTCCCAAATCTTATATTATGGCTGCGCCTACCGCGACCAACCTGACCGGCC
AGCCGCCCCGCCGTCGTCGCCTCTGCCGCCGCGATTTGTCCGGCGGGATCGCACGAGGAAGAAAGGGAGAGAGATGAGGA
GCAGCGAGGCCATGGAGCTCCTGGGCTTCGCTCCCTGCTCCCGCCCGTCCCCTTCCGAGGTTAAGGCTGCGTATAGAAGA
ATGGTCATGGAGTCCCATCCCGATCGCGTCCCGATGGATCAGAAGCCTCAAGCCGAGTCAAAATTCAAGCAGGTAGTAGA
AGCATATTCTTGTTTGAAGGATGGTCGAAGATTTGGGAACAGAATGGAAGTACATGTAATGAGGTCTGGTGTTCCAACGG
GATACAGAAGATCAAACAAGATATTGGTTAAAGCCCCCTTTCTGCTCATAATTTGTGCCGCAGTTTCCTTTGGTTCCTAC
AGCGCTTCGAGGGCATACCAGCGGCAAAAGGATGTGTGTTCCTCTCAGAACCCTTTTCTTCCATAA

Alignment

ORF - retro_taes_95 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.99 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MRSSEAMELLGFAPYSRPSPSEVSSVKAAYRRMVMESHPDRVPMDQKPQAESKFKQVVEAYSCLKDGRRF
          MRSSEAMELLGFAP.SRPSPSE...VKAAYRRMVMESHPDRVPMDQKPQAESKFKQVVEAYSCLKDGRRF
Retrocopy MRSSEAMELLGFAPCSRPSPSE---VKAAYRRMVMESHPDRVPMDQKPQAESKFKQVVEAYSCLKDGRRF

Parental  GNRMEVHVMRSGVPTGYRRSNKILVKAPFLLIICAAVSFGSYSASRAYQRQKDVCSSQNPFLP
          GNRMEVHVMRSGVPTGYRRSNKILVKAPFLLIICAAVSFGSYSASRAYQRQKDVCSSQNPFLP
Retrocopy GNRMEVHVMRSGVPTGYRRSNKILVKAPFLLIICAAVSFGSYSASRAYQRQKDVCSSQNPFLP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Triticum aestivum was not studied using RNA-Seq expression data.

ChIP-Seq

Triticum aestivum was not studied using ChIP-Seq data.

EST

Triticum aestivum was not studied using EST data.

TSS

Triticum aestivum was not studied using FANTOM5 data.

Lab

retro_taes_95 was not experimentally validated.

Homology

Retrocopy orthology:

Triticum aestivum does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Triticum aestivum	Traes_2AS_3EC4D7685	1 retrocopy	retro_taes_95 ,