RetrogeneDB ID: | retro_tbel_1026 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_3612:1001869..1002150(+) | ||
Located in intron of: | ENSTBEG00000000856 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL13 | ||
Ensembl ID: | ENSTBEG00000004571 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L13 [Source:HGNC Symbol;Acc:14278] |
Percent Identity: | 70.53 % |
Parental protein coverage: | 55.62 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | YPGGFRQVTAAQLHQRDPVAIVKLAIYGMLPKNLHRRTLMQRLHLF-PDENIPEDILKNLVEELPQPRKI |
YPG.FR.VTAA.LHQRDP.AIVKLAI.GMLPK.L.R.....R.HLF.PDE.IPED.LKNL.EE..Q.RKI | |
Retrocopy | YPGRFR*VTAARLHQRDPEAIVKLAICGMLPKTLYRHGCKRRMHLF<PDEDIPEDSLKNLTEEISQSRKI |
Parental | PRRLDEYTQEEIEAFPRVWSPPEDY |
PR.LD.YTQ.E.EAFPRV.S.P..Y | |
Retrocopy | PRCLDKYTQKETEAFPRVRSLPKNY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006926 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005359 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000016654 | 1 retrocopy | |
Equus caballus | ENSECAG00000021161 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000001080 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000016189 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000015721 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000003719 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000004401 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000005996 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000004571 | 5 retrocopies |