RetrogeneDB ID: | retro_tbel_1350 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_4474:107394..107892(+) | ||
Located in intron of: | ENSTBEG00000007649 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL49 | ||
Ensembl ID: | ENSTBEG00000007929 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L49 [Source:HGNC Symbol;Acc:1176] |
Percent Identity: | 86.14 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAAVALRATLRSLKTGVQSGYGLRRQSQTQQPPDYPNFVESVDEYKFVERLLPPTSIPKPSKHEHYPTPS |
MAAVALRATLR...TGVQSG.GLR.QS.T.QPPDYPNFVESV.EY.FVE.LLPPTSIPKPSKHE.YPTPS | |
Retrocopy | MAAVALRATLRGWQTGVQSGCGLRWQSHTRQPPDYPNFVESVNEYRFVELLLPPTSIPKPSKHEQYPTPS |
Parental | GWQPPRDPPPKLSYFVRRSRMHNIPVYKDITHGNRQMTVIRKVEGDIWALQKDVEEFLSPLLGKTPITQV |
GWQPPRDPPPKLSY.V..SRM.NIP.YKDITHGNRQ.TVI.KVEGDIWALQKDVEEFLSPLLGKTP.TQV | |
Retrocopy | GWQPPRDPPPKLSYSVQCSRMYNIPIYKDITHGNRQITVIWKVEGDIWALQKDVEEFLSPLLGKTPLTQV |
Parental | NEVTRTLRVKGYFDQQLKAWLLEKGF |
NEVT.TL.VKGY.DQQLKAWL.EKGF | |
Retrocopy | NEVTCTLPVKGYSDQQLKAWLPEKGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012855 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000004494 | 6 retrocopies | |
Dipodomys ordii | ENSDORG00000003613 | 1 retrocopy | |
Homo sapiens | ENSG00000149792 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000009437 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000016604 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000018778 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005505 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000014882 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000003867 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000007929 | 2 retrocopies |
retro_tbel_1350 , retro_tbel_3334,
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