RetrogeneDB ID:

retro_tbel_1486

Retrocopy
location
Organism:Treeshrew (Tupaia belangeri)
Coordinates:GeneScaffold_4865:56537..56915(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MNF1
Ensembl ID:ENSTBEG00000001380
Aliases:None
Description:mitochondrial nucleoid factor 1 [Source:HGNC Symbol;Acc:21237]


Retrocopy-Parental alignment summary:






>retro_tbel_1486
ATGGCAGCCACCCACTACTGATGATTTCTTAAGCTCTGTGAGGAATGGCCCATGGATAAGACCAAACGGGGATGGGACTT
GGTCACTTACCCGCGAGAGCAGGTAGCACAGGTCTTTCGGGAGGGAGAAAACAACCAGATTTCAGAGCCTGAGGTCTGTG
ATCAGATGTACCGGAGCTTTGCACAACTCCATTCAAACTACTGAAAACACTAGTACCCTCACCCCAGAGACACCAGCTTC
AGTGGCCTATCAGCGGAAGAGTACAAGCTGATGCTGTCCACAGACAACTTGGAAGAGTTTTAAGGAATTAATAAAGGCAT
GTGGAAGAAACTGCAGATGTTTGCCCATAAGAATCCTGAAGAGAAACATACAGTCTGG

ORF - retro_tbel_1486 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70.87 %
Parental protein coverage: 100. %
Number of stop codons detected: 5
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMLASRYRRFVKFCEEWPVDETKWGRDLGTYLRQRVAQAFREGENTQIAEPEACDQMYQSLARLHSNYYKH
M.A..Y..F.K.CEEWP.D.TK.G.DL.TY.R..VAQ.FREGEN.QI.EPE.CDQMY.S.A.LHSNY.KH
RetrocopyMAATHY**FLKLCEEWPMDKTKRGWDLVTYPREQVAQVFREGENNQISEPEVCDQMYRSFAQLHSNY*KH
ParentalKYPRPRDTSFSGLSVEEYKLILSTDTLGEFKEINKGMWKKLQEKFASKGPEEKHKAW
.YP.PRDTSFSGLS.EEYKL.LSTD.L.EF..INKGMWKKLQ..FA.K.PEEKH..W
Retrocopy*YPHPRDTSFSGLSAEEYKLMLSTDNLEEF*GINKGMWKKLQ-MFAHKNPEEKHTVW

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tupaia belangeri was not studied using RNA-Seq expression data.
Tupaia belangeri was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_tbel_1486 retrocopy.
Tupaia belangeri was not studied using FANTOM5 data.
retro_tbel_1486 was not experimentally validated.

Retrocopy orthology:
Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 9 parental genes, and 19 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000312701 retrocopy
Dasypus novemcinctus ENSDNOG000000020191 retrocopy
Echinops telfairi ENSETEG000000069792 retrocopies
Macropus eugenii ENSMEUG000000052783 retrocopies
Monodelphis domestica ENSMODG000000139961 retrocopy
Mustela putorius furoENSMPUG000000030321 retrocopy
Mus musculus ENSMUSG000000242082 retrocopies
Otolemur garnettii ENSOGAG000000156042 retrocopies
Tupaia belangeri ENSTBEG00000001380 6 retrocopies



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