RetrogeneDB ID: retro_tbel_1638

Retrocopy location

• Organism: Treeshrew (Tupaia belangeri)
• Coordinates: GeneScaffold_5350:7471..7787(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSTBEG00000002991
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: GLRX2
• Ensembl ID: ENSTBEG00000011216
• Aliases: None
• Description: glutaredoxin 2 [Source:HGNC Symbol;Acc:16065]

Sequence

>retro_tbel_1638
TCCGTGGGGAAGTCAGCAAATGCCCCTGCGACCCAGATCCAAGAAACCATTTCTGATAATTGTGTGGTGATTTTCTCAAA
AACATCCTGCTCTTACTGTACAATGGCAAAAAGCTTTTCCATGACATGAACGTTAGTTGTAAAGTGGTGGAATTGACATG
CTGGAATATGGAAGCCAGTTTCAAGACGCCCTTTACAAGATGACTGGGGAAAGAACCGTTCCAAGAATTTTTGTCAATGG
AACTTTTATTGGAGGTGCAACTGACACTCACAGGCTTCACAAAGAAGGGAAATTGCTCCCGCTCATTCATCAGTGT

Alignment

ORF - retro_tbel_1638 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89.81 %
• Parental protein coverage: 86.18 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  SVGKSAXXXXXXXXETISDNCVVIFSKTSCSYCTMAK-KLFHDMNVSCKVVEL-DMLEYGSQFQDALYKM
          SVGKSA........ETISDNCVVIFSKTSCSYCTMAK.KLFHDMNVSCKVVEL.DMLEYGSQFQDALYKM
Retrocopy SVGKSANAPATQIQETISDNCVVIFSKTSCSYCTMAK<KLFHDMNVSCKVVEL<DMLEYGSQFQDALYKM

Parental  TGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQC
          TGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPL.HQC
Retrocopy TGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLIHQC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq

Tupaia belangeri was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_tbel_1638 retrocopy.

TSS

Tupaia belangeri was not studied using FANTOM5 data.

Lab

retro_tbel_1638 was not experimentally validated.

Homology

Retrocopy orthology:

Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000015972	1 retrocopy	retro_btau_543,
Choloepus hoffmanni	ENSCHOG00000007274	1 retrocopy	retro_chof_2375,
Callithrix jacchus	ENSCJAG00000008562	1 retrocopy	retro_cjac_643,
Equus caballus	ENSECAG00000015376	1 retrocopy	retro_ecab_169,
Felis catus	ENSFCAG00000025580	1 retrocopy	retro_fcat_733,
Myotis lucifugus	ENSMLUG00000015734	1 retrocopy	retro_mluc_1008,
Tupaia belangeri	ENSTBEG00000011216	1 retrocopy	retro_tbel_1638 ,
Drosophila melanogaster	FBgn0036820	1 retrocopy	retro_dmel_4,