RetrogeneDB ID: retro_tbel_2141

Retrocopy location

• Organism: Treeshrew (Tupaia belangeri)
• Coordinates: scaffold_102016:5165..6338(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ASZ1
• Ensembl ID: ENSTBEG00000010882
• Aliases: None
• Description: ankyrin repeat, SAM and basic leucine zipper domain containing 1 [Source:HGNC Symbol;Acc:1350]

Sequence

>retro_tbel_2141
AAATTAATAGGACCATTACCTGCTGAAGAAAAGAGTGAGACATTTAAGAGAGCACTGACCACTGGAGATATTTCGTTGGT
CAAGGAGCTCCTAGATTCTGGCATTAGTATAGATTCCAGCTTTTGATATGGATGGACTCCCTTTATGTATACTGCTAGCA
TTGCCAATGTAGAACTTGTTCGGGTCCTTTTGGACAGAGGTGCTAATGCAAGCTTTGATAAGGATAAGCAAACTATTTTG
ATAACTGTGTGCTCTGCTCGTGGCTCAGAGGAACAGATTTTGAAGTGTGTAGAGCTACTACTTTCAAGAAATGCTGACCT
GAATGTTCCTTGTAGGAGACTTATGACTCCAATCATGTATGCTGCACAAGATGGCCACCCTCAGGTTGTGGCTATCTTTG
TTGCTCATGGAGTGGAAATTAATACCCAGGGTGAGAATGGCTATACTGCTTTAACATGGGCATCACGTCGAGATCATACA
AATATAGTTTTGAAGTTGCTGGAACTTGGAGCTAATAAAATGCTAAAAACCAAAGATGGAAAGACACCAAGTGTGACTGC
AAAAAGAAATAAGCATCTTGAGATCTTCAACTTGCTTTCTTTGACTTTAAATCCAGTAGAAGGAAAGCTTCAAAAGCTAA
CTAAAGAGACTATTTGTAAACTACTGACAACAGATTCTGATAAAAATAAAGATAACATACGTAGTTCATACACAGCATTT
GGAGATCTGGAAATATTTTTACATGGTCTTGGACTTGAACATATGACAGATGTATTAAAGGAAAGGGATATAATTTTAAG
ACACCTGTTGACCATGAGGAAAGATGAGTTTATAAAGAATGGAATTAGTAGTAAAGATCAGCAGAAAATTCTGGCTGCTC
TTAAAGAATTAGAGGTAGAAGAGATAAAATTGGGAGAATTACCTGAAGTGGCAAAGTTGGAAATCAGTGGTGATGAGTTC
CTCAACTTTCTTCTAAAATTAAACAAACAGTGTGGCCACTTAATAACAGCTGTACAGAATATCATTGCTGAGTTACCTGT
AAATTCTCACAAGATAGTACTAGAATGGGCTTCTCCCCGAAATTTTAATTCAGTTTGTGAAGAACTCGTTAGTAATGTTG
AAGATTTGAGTGAAGAGGTCTGCAAACTAAAGGACTTAATTCAAAAGTTGCAA

Alignment

ORF - retro_tbel_2141 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.11 %
• Parental protein coverage: 89.07 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KLRGPLPAEEKSETFKRALTTGDISLVKELLDSGISVDSSFRYGWTPLMYTASVANVELVRVLLDKGANA
          KL.GPLPAEEKSETFKRALTTGDISLVKELLDSGIS.DSSF.YGWTP.MYTAS.ANVELVRVLLD.GANA
Retrocopy KLIGPLPAEEKSETFKRALTTGDISLVKELLDSGISIDSSF*YGWTPFMYTASIANVELVRVLLDRGANA

Parental  SFDKDKQTILITACSARGSEEQILKCVELLLSRNADPNVPCRRLMTPIMYAARDGHPQVVALLVAHGAEI
          SFDKDKQTILIT.CSARGSEEQILKCVELLLSRNAD.NVPCRRLMTPIMYAA.DGHPQVVA..VAHG.EI
Retrocopy SFDKDKQTILITVCSARGSEEQILKCVELLLSRNADLNVPCRRLMTPIMYAAQDGHPQVVAIFVAHGVEI

Parental  NTQDENGYTALTWASRQGHKNVVLKLLELGANKMLQTKDGKTPSEIAKRNKHLEIFNLLSLTLNPVEGKL
          NTQ.ENGYTALTWASR..H.N.VLKLLELGANKML.TKDGKTPS..AKRNKHLEIFNLLSLTLNPVEGKL
Retrocopy NTQGENGYTALTWASRRDHTNIVLKLLELGANKMLKTKDGKTPSVTAKRNKHLEIFNLLSLTLNPVEGKL

Parental  QQLTKEETICKLLTTDSDKDKDNIFSSYTAFGDLEIFLHGLGLEHMTDVLKERDITLRHLLTMRKDEFIK
          Q.LTK.ETICKLLTTDSDK.KDNI.SSYTAFGDLEIFLHGLGLEHMTDVLKERDI.LRHLLTMRKDEFIK
Retrocopy QKLTK-ETICKLLTTDSDKNKDNIRSSYTAFGDLEIFLHGLGLEHMTDVLKERDIILRHLLTMRKDEFIK

Parental  NGISSKDQQKILAALKELEVEEIKFGELPEVAKLEISGDEFLN-LLKLNKQCGHLITAVQNIIAELPVNS
          NGISSKDQQKILAALKELEVEEIK.GELPEVAKLEISGDEFLN.LLKLNKQCGHLITAVQNIIAELPVNS
Retrocopy NGISSKDQQKILAALKELEVEEIKLGELPEVAKLEISGDEFLNFLLKLNKQCGHLITAVQNIIAELPVNS

Parental  HKIVLEWASPRNFNSVCEELVSNVEDLSEEVCKLKDLIQKLQ
          HKIVLEWASPRNFNSVCEELVSNVEDLSEEVCKLKDLIQKLQ
Retrocopy HKIVLEWASPRNFNSVCEELVSNVEDLSEEVCKLKDLIQKLQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq

Tupaia belangeri was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_tbel_2141 retrocopy.

TSS

Tupaia belangeri was not studied using FANTOM5 data.

Lab

retro_tbel_2141 was not experimentally validated.

Homology

Retrocopy orthology:

Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Tupaia belangeri	ENSTBEG00000010882	4 retrocopies	retro_tbel_2141 , retro_tbel_3136, retro_tbel_4013, retro_tbel_4696,