>retro_tbel_2420
GCGGTGTCCAAGGAGCATGATTATCAGATTGAAGTTTCATAGCCAACAGTGGAGGAAGAGAAGGAAGCTAAATTATTTAA
AGACCCAGACATGACAGATGTATTATGTGAAGTTTCTGACCAGTTAGGATGGACAAAGCTCACCAAGATCTAGATTGAAG
CTATTCTTTTGGCCTTTCAAGGTTGTGATATCATTGCGCTACCAGGAACTGGCTATGGGGAAATAGAAGCCTTTGCTTTG
CCCATTCTGAACGTGCTGCTGGAGATGCCCCAGCATTTGTTTGCCCTGGTTCTCACTCTGACTTGAGAGTTGACTTTTAA
GATCTCAGAGCAGTTTGAGACCCTGGGGTCCTTTATTAGAGAACAAAATGCTGTGATTGTAGGTGGAATTGATTCAATGT
CCTAGTACCAAGCCTTGGCAAAAAACCTTATATACTAATCACAGCTCTTAGTTGACAAATTGACCACTTGGAAAATATAA
AATGTTTCAATTTAAGAGCCTGCAAATACTTGGTCACGGATGGAGCAGATTGAATATTGAATATGGATTTTGAGACAGAA
GTTGATAAGGTCCTCAAAGTGATTCCCCACTATTGGAAAACTCTTCTTTTCCCTGCTACCATGACCAAGAAGTTGCAAAA
CTTCAGCAAGCAGCTCTGAAGAGTCCTGTGAAATGTGATGTTTCCTCAAAGTACCAGATGCTTGAGAAATTACAATATTA
TTTT
ORF - retro_tbel_2420 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
65.98 % |
Parental protein coverage: |
52.97 % |
Number of stop codons detected: |
6 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | AAPEEHDSQTEVSQPAGEEE-ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAET |
| A...EHD.Q.EVS.P..EEE.E.K.FKD...TDVLCE..DQLGWTK.TKI.IEAI.LA.QG.DII.L..T |
Retrocopy | AVSKEHDYQIEVS*PTVEEEKEAKLFKDPDMTDVLCEVSDQLGWTKLTKI*IEAILLAFQGCDIIALPGT |
|
Parental | GSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA |
| G.G...AFALPILN.LLE.PQ.LFALVLT.T.EL.F.ISEQFE.LGS.I..Q.AVIVGGIDSMS...ALA |
Retrocopy | GYGEIEAFALPILNVLLEMPQHLFALVLTLT*ELTFKISEQFETLGSFIREQNAVIVGGIDSMS*YQALA |
|
Parental | -KKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDEAXXXXXXXXXXXVDKILKVIPRDRKTFLFSATMT |
| .KKP.I.I......IDHLEN.K.FNLRA.KYLV.D.A...........VDK.LKVIP...KT.LF.ATMT |
Retrocopy | <KKPYILITALS*QIDHLENIKCFNLRACKYLVTDGAD*ILNMDFETEVDKVLKVIPHYWKTLLFPATMT |
|
Parental | KKVQ-KLQRAALKNPVKCAVSSKYQTVEKLQQYY |
| KK.Q.KLQ.AALK.PVKC.VSSKYQ..EKLQ.Y. |
Retrocopy | KKLQ<KLQQAALKSPVKCDVSSKYQMLEKLQYYF |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Tupaia belangeri was not studied using RNA-Seq expression data.
Tupaia belangeri was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_tbel_2420 retrocopy.
Tupaia belangeri was not studied using FANTOM5 data.
retro_tbel_2420 was not experimentally validated.
Retrocopy orthology:
Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
4 retrocopies.