RetrogeneDB ID: retro_tbel_2624

Retrocopy location

• Organism: Treeshrew (Tupaia belangeri)
• Coordinates: scaffold_114405:101233..101791(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ARL6IP5
• Ensembl ID: ENSTBEG00000001491
• Aliases: None
• Description: ADP-ribosylation-like factor 6 interacting protein 5 [Source:HGNC Symbol;Acc:16937]

Sequence

>retro_tbel_2624
AAGGACATGAATATCACCCTGCTCCGTGCTGGGAATGATTTCTTCTCAGGCTCTGACTGCTTCACCCTGCTGACTTCAAG
GACATTTCTAAATGGAACAACCTTGCAGTGGGCAAACTGTTCTTTTACCAGATCAACTACGTGGTAGTGGCTGCCATGAT
TATTTCCATCCTGGGGTTTTTTGAGCCCCTTCACCATGATACTTGGAGGAATTGTAGTACTGGTGTTCAGAGGGTTTGTG
TGAGCAGACCACAATAAAGATGTGTTCTGTCGGATGTAGAAGCGCTACCCCACCACAATTCATGATAGTGGTTATGCAGA
CTAGCTACTTTCTCATATCCATGTTTTGGGGAGTCATGGTCTTTGTCTTTGGTCTTACTTTTCCATTGCTACCGATGTTC
ATTCAGGCATCCTTAAGACTTCAGGACCTTAATAAATTGGAGAACAGATGGAGGGAATAGGATTGAAGAAGACACCCATG
GGCCTTGTCCTGGATGCACTAACACAGCAGGAAGAGAACATCAACAGACTAACTGATTATATCAACAAAGTGAAGGAG

Alignment

ORF - retro_tbel_2624 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.88 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 2
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  KDVNIAPLRAWDDFFPGSDRFAR-PDFKDISKWNNRVVSNLLYYQTNYLVVAAMMISVVGF-LSPFNMIL
          KD.NI..LRA..DFF.GSD.F....DFKDISKWNN..V..L..YQ.NY.VVAAM.IS..GF.LSPF.MIL
Retrocopy KDMNITLLRAGNDFFSGSDCFTL<ADFKDISKWNNLAVGKLFFYQINYVVVAAMIISILGF>LSPFTMIL

Parental  GGIVVVLVFTGFVWAAHNKDVLRRMKKRYPTA-FVMVVMLASYFLISMFGGVMVFVFGITFPLLLMFIHA
          GGIVV.LVF.GFV.A.HNKDV..RM.KRYPT..F..VVM..SYFLISMF.GVMVFVFG.TFPLL.MFI.A
Retrocopy GGIVV-LVFRGFV*ADHNKDVFCRM*KRYPTT>FMIVVMQTSYFLISMFWGVMVFVFGLTFPLLPMFIQA

Parental  SLRLRNFKNKLENK-MEGIGLKRTPMGIVLDALEQQEENITKITDYISKVKE
          SLRL....NKLEN..MEGIGLK.TPMG.VLDAL.QQEENI...TDYI.KVKE
Retrocopy SLRLQDL-NKLENR<MEGIGLKKTPMGLVLDALTQQEENINRLTDYINKVKE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq

Tupaia belangeri was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_tbel_2624 retrocopy.

TSS

Tupaia belangeri was not studied using FANTOM5 data.

Lab

retro_tbel_2624 was not experimentally validated.

Homology

Retrocopy orthology:

Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Macaca mulatta	ENSMMUG00000008627	1 retrocopy	retro_mmul_2122,
Tupaia belangeri	ENSTBEG00000001491	1 retrocopy	retro_tbel_2624 ,