RetrogeneDB ID: retro_tbel_2660

Retrocopy location

• Organism: Treeshrew (Tupaia belangeri)
• Coordinates: scaffold_115584:85772..87154(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZBTB24
• Ensembl ID: ENSTBEG00000011001
• Aliases: None
• Description: zinc finger and BTB domain containing 24 [Source:HGNC Symbol;Acc:21143]

Sequence

>retro_tbel_2660
TTGCCAGCTGAAAAAGATGAGAACCAGGATCCCAAGACCCAGGATGGGCAAGACAGCCAGAGTCGGTACAGTGAGCGGAG
GATTCGGAGATCTGTCAAACTTAAAGATTACAAACTTGTTGGGGATGAAGAAGACCAGGGTTCAGCTAAGAGGATCTGTG
GAGGAGAAAGAGTCCTGGTGGTCCTGAGGCCCAAGACTGTGGCAAAGTTTTTAAATACAATCACTTTTAAGCAATCCATC
AAAGGAGCCACACAGGGGAGCGACCTTTCAAGTGCAATGAGTGTGGAGAAGACTTTGCCCAGAAGCACTCCCTACAGGTC
CACACCAGGATGCACACCGGCCAGCGGCCATACACCTGTACCGTGTGCAGCAAGGCTTTGACCACCAAGCACTTGCTGCT
GGAGGACATGAGCCTGCATTCAGGACAGAAGTCTTTTACCCATGATCAGTGTGGAACATATTTTAGCCAGAGAAGACAAC
TAAAGAGCCATTACCAAATCCGTATAGGCCACTCATTACCGGAATGTAATCACTGCCATCGCACATTCATGGATGTGTCT
CAGCTAAAGAAACACCTCCGAATGCACACAGGTGAGAAGCCATTTACTTGTGAAATCTGTGGCAATTCTTTCACGGCAAA
GAGTTCTCTTCAGACTCACATCAGAATGCACCGAGGAGAAAAGCCGTACTCTGCCATAAATGGCAAATCTTTCTCTGACT
CCAGTGCCAAGAGGAGACACTACCTTCTGCACACAGGCAAAAAGCCTTTCTTCTGCCCCGAGTGTAACTTACAATTTGCC
TGCTTAGACAACTTGAAGGCTCACTTGAAAATCCATAGCAGAGAGAAACACACGGCAGATGCCAGCTGTGTGCCCAACAG
TAGTAATACTGAAGAGGTCCGAGATATTCTCCAGCTACAGCCATGCCAGCTCTCTGCCTCAGGAGAACAGGAAATTCAGC
TTCTTGTAACCGATTCTGTTCATAACATCAGTTTCATGCCCGGTCCTAACCAAGGGATCAGAGTTGTCACTGCAGAGAGT
TCCCAGAACATGACTGCAGACCAGGCTGCCAACCTCAGCCTGCAGCCAGAGCGCCTGCAGAATTTGCTTCTTTCAGCCCA
GCAGGAACAAACAGAACACAGTCAGAGCCTCAATATGATTGAAAGCCAGATGGAGCCCTCGCAGACAGAGCCTGTGCACG
TAATCACACTGTCCAAGGAAACGCTGGCACATCTTCACACCCATCAAGAACAAACAGAGGAGCTCCGCTTAGCAGCAAGT
GCTTCCGGCCCGGCTCAGCACCTGCAGCTGACACAGGAACCTGGGCCACCGCCTCCCAGTCACCACATGCCGGAGCCCAC
ACTGCTTGGCCAGGAGCAGAGC

Alignment

ORF - retro_tbel_2660 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.83 %
• Parental protein coverage: 67.15 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MPAEKDENQDPKTQDGQDSQSRYSKRRIRRSVKLKDYKLVGDEEDQGSAKRICG-RRKRPAGPEARCKDC
          .PAEKDENQDPKTQDGQDSQSRYS.RRIRRSVKLKDYKLVGDEEDQGSAKRICG.RRK.P.GPEA...DC
Retrocopy LPAEKDENQDPKTQDGQDSQSRYSERRIRRSVKLKDYKLVGDEEDQGSAKRICG<RRKSPGGPEAQ--DC

Parental  GKVFKYNHFLAIHQRSHTGERPFKCNECGKDFAQKHSLQVHTRMHTGQRPYTCTVCSKALTTKHSLLEHM
          GKVFKYNHF.AIHQRSHTGERPFKCNECG.DFAQKHSLQVHTRMHTGQRPYTCTVCSKALTTKH.LLE.M
Retrocopy GKVFKYNHF*AIHQRSHTGERPFKCNECGEDFAQKHSLQVHTRMHTGQRPYTCTVCSKALTTKHLLLEDM

Parental  SLHSGQKSFTCDQCGKYFSQRRQLKSHYRIHTGHSLPECNHCHRKFMDVSQLKKHLRTHTGEKPFTCEIC
          SLHSGQKSFT.DQCG.YFSQRRQLKSHY.I..GHSLPECNHCHR.FMDVSQLKKHLR.HTGEKPFTCEIC
Retrocopy SLHSGQKSFTHDQCGTYFSQRRQLKSHYQIRIGHSLPECNHCHRTFMDVSQLKKHLRMHTGEKPFTCEIC

Parental  GKSFTAKSSLQTHIRIHRGEKPYSCGICGKSFSDSSAKRRHCILHTGKKPFFCPECNLQFARLDNLKAHL
          G.SFTAKSSLQTHIR.HRGEKPYS..I.GKSFSDSSAKRRH..LHTGKKPFFCPECNLQFA.LDNLKAHL
Retrocopy GNSFTAKSSLQTHIRMHRGEKPYSA-INGKSFSDSSAKRRHYLLHTGKKPFFCPECNLQFACLDNLKAHL

Parental  KIHSKEKHTADASCVSSSSNTEEVRNILQLQPYQLSASGEQEIQLLVTDSVHNINFMPGPSQGISIVTAE
          KIHS.EKHTADASCV..SSNTEEVR.ILQLQP.QLSASGEQEIQLLVTDSVHNI.FMPGP.QGI..VTAE
Retrocopy KIHSREKHTADASCVPNSSNTEEVRDILQLQPCQLSASGEQEIQLLVTDSVHNISFMPGPNQGIRVVTAE

Parental  SSQNMTADQAANLSLQPEHLQNLLLSAQQEQTEHIQSLNMIESQMEPSQTEPVHVITLSKETLAHLHTHQ
          SSQNMTADQAANLSLQPE.LQNLLLSAQQEQTEH.QSLNMIESQMEPSQTEPVHVITLSKETLAHLHTHQ
Retrocopy SSQNMTADQAANLSLQPERLQNLLLSAQQEQTEHSQSLNMIESQMEPSQTEPVHVITLSKETLAHLHTHQ

Parental  EQTEELRLAASASGPAQHLQLTQEPGPPPPSHHMPEPTLLGQEQS
          EQTEELRLAASASGPAQHLQLTQEPGPPPPSHHMPEPTLLGQEQS
Retrocopy EQTEELRLAASASGPAQHLQLTQEPGPPPPSHHMPEPTLLGQEQS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq

Tupaia belangeri was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_tbel_2660 retrocopy.

TSS

Tupaia belangeri was not studied using FANTOM5 data.

Lab

retro_tbel_2660 was not experimentally validated.

Homology

Retrocopy orthology:

Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tupaia belangeri	ENSTBEG00000011001	1 retrocopy	retro_tbel_2660 ,