RetrogeneDB ID: retro_tbel_2697

Retrocopy location

• Organism: Treeshrew (Tupaia belangeri)
• Coordinates: scaffold_116894:211396..211682(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZFAND2A
• Ensembl ID: ENSTBEG00000007079
• Aliases: None
• Description: zinc finger, AN1-type domain 2A [Source:HGNC Symbol;Acc:28073]

Sequence

>retro_tbel_2697
ATGAAATTTTCTGATTTGGGGAAGCATTGTTCAGGAAAAACTTGCAAGGACCTAAATTTTCTTCCACTAAAATGTGATGC
ATGTAAACAAGATTTCCATAAAGATCACTTGACATATGCTGTACATGAGTGTCCTTTTGCATTCAAGAAGGATGTCCAGG
TCCAAGTATCCCCACAGGGACCCGTTTGTAACACCCAATCCAGTAAGGAAGGGAGAGATACCAGGTGTGGTGGTTCGTGA
GAGCACAATGACAGACTATAACTACCATCCTGGGAAGAAAAAGAAG

Alignment

ORF - retro_tbel_2697 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.43 %
• Parental protein coverage: 98.94 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MEFPDLGKHCSEKTCKQLDFLPLKCDACKQDFCKDHFTYAAHKCPFAFKKDVQVPVCP---LCNT-PI-P
          M.F.DLGKHCS.KTCK.L.FLPLKCDACKQDF.KDH.TYA.H.CPFAFKKDVQV.V.P....CNT.PI.P
Retrocopy MKFSDLGKHCSGKTCKDLNFLPLKCDACKQDFHKDHLTYAVHECPFAFKKDVQVQVSPQGPVCNT<PI<P

Parental  IKKGEIPDVVVGEHIDRDCNYHPGKNKE
          ..KGEIP.VVV.E....D.NYHPGK.K.
Retrocopy VRKGEIPGVVVRESTMTDYNYHPGKKKK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq

Tupaia belangeri was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_tbel_2697 retrocopy.

TSS

Tupaia belangeri was not studied using FANTOM5 data.

Lab

retro_tbel_2697 was not experimentally validated.

Homology

Retrocopy orthology:

Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000015776	1 retrocopy	retro_cjac_2957,
Loxodonta africana	ENSLAFG00000005496	1 retrocopy	retro_lafr_211,
Microcebus murinus	ENSMICG00000002112	1 retrocopy	retro_mmur_441,
Monodelphis domestica	ENSMODG00000025494	1 retrocopy	retro_mdom_34,
Sarcophilus harrisii	ENSSHAG00000000364	2 retrocopies	retro_shar_756, retro_shar_779,
Tupaia belangeri	ENSTBEG00000007079	2 retrocopies	retro_tbel_2636, retro_tbel_2697 ,