RetrogeneDB ID: | retro_tbel_2833 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_120663:193571..193922(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TIPRL | ||
Ensembl ID: | ENSTBEG00000017081 | ||
Aliases: | None | ||
Description: | TIP41, TOR signaling pathway regulator-like (S. cerevisiae) [Source:HGNC Symbol;Acc:30231] |
Percent Identity: | 75.21 % |
Parental protein coverage: | 65.73 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EGEHSKEVIKPYDWTYTTDYKGTLLGESLKLKVVPTTDHIDTEKLKAREQIKFFEEVLLFEDELHDHGVS |
EG.HSKE..KPYDWTY.TDYKGTLLGESLKLKV.PTTD.IDTEKLKAREQ.K.F.EVLLFE..LHD.G.S | |
Retrocopy | EGKHSKEFTKPYDWTYITDYKGTLLGESLKLKVIPTTDYIDTEKLKAREQTKVFKEVLLFENKLHDYGIS |
Parental | SLSVKIRVMPSSFFLLLRFFLRIDGVLIRMNDTRLYHEADKTYMLRE |
.LSVKIRVMPSSFFLLL.FFL.IDG.LIRM.D..L.......YM..E | |
Retrocopy | ILSVKIRVMPSSFFLLLQFFLGIDGMLIRMYDMTLMAYLLREYMSQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000008689 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000009945 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000005808 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000007808 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011927 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000002880 | 1 retrocopy | |
Mus musculus | ENSMUSG00000040843 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000011313 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000005071 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000003048 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000018932 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000014921 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000017081 | 3 retrocopies |
retro_tbel_1717, retro_tbel_2833 , retro_tbel_3376,
|