RetrogeneDB ID: | retro_tbel_2974 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_125655:140480..141232(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GNAQ | ||
Ensembl ID: | ENSTBEG00000009447 | ||
Aliases: | None | ||
Description: | guanine nucleotide binding protein (G protein), q polypeptide [Source:HGNC Symbol;Acc:4390] |
Percent Identity: | 79.53 % |
Parental protein coverage: | 70.19 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | AHAQLVREVDVEKVSAFENPYVDAIKSLWNDPGIQECYDRRREYQLSDSTKYYLNDLDRVADPAYLPTQQ |
AHAQLVREVDV.KVSAFE.PYVDAIKSL.NDPGIQEC..R..EYQL.DSTKYYLNDLD..ADPAYLPTQQ | |
Retrocopy | AHAQLVREVDVQKVSAFETPYVDAIKSL*NDPGIQECFNRQGEYQLPDSTKYYLNDLDPIADPAYLPTQQ |
Parental | DVLRVRVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENR |
DVLRVRVPT.GII...F.LQSVIFRMV.VGGQRSER.KWIHCFENVTSIM.LV.LSEYDQVLVESD.ENR | |
Retrocopy | DVLRVRVPT-GIIDTHFHLQSVIFRMVSVGGQRSERTKWIHCFENVTSIMVLVVLSEYDQVLVESDIENR |
Parental | MEES-KALFRTIITYPWFQNSS-VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVD |
MEES.KALFRT.ITYPWFQNS........K..L.E..IMY.HLVDYFPEY.G...DAQAA.EF..KMFVD | |
Retrocopy | MEES>KALFRTMITYPWFQNSC>ILFLNKKDLLEEK-IMYYHLVDYFPEYAGQEKDAQAAQEFTVKMFVD |
Parental | LNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNLKEYNLV |
LNPDSDKIIY.HFT.ATD...I..VF.AVKDT.LQLNLKEYNLV | |
Retrocopy | LNPDSDKIIYFHFTLATDMASIHYVFTAVKDTVLQLNLKEYNLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Nomascus leucogenys | ENSNLEG00000002860 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000019311 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000009447 | 2 retrocopies |
retro_tbel_2487, retro_tbel_2974 ,
|
Tupaia belangeri | ENSTBEG00000015771 | 1 retrocopy |