RetrogeneDB ID: retro_tbel_3399

Retrocopy location

• Organism: Treeshrew (Tupaia belangeri)
• Coordinates: scaffold_139309:10463..10865(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSTBEG00000006491
• Aliases: None
• Description: None

Sequence

>retro_tbel_3399
AAGAACCATGAGGAGGAAACAAGTGTCCTGAGGGGGCCAATGGGTGTGGCCAGGTCAGGATGGAAATGGATTCTGCTCCA
GGCATCCACCTAGTCTAGATCCTAGGCGACATGAGAAACCAGTATGAAGTCATGGCTGAGCAGAACCAGAGGATGTGGAA
GCCTGGTTCACCAGCAGGAATGAAGAGTTTAACTGGGAGGTCTCTGGCCACATCACTGTGTGTGTGCAGCTCCAGATGAG
CAAGTCTGAGATTATTGACCTGCAGCGTACCCTCCGCAGTCTTGAGATTGAACTGCAATCACAGCTGAGCATGAAAGTCA
ACCGGGAAGGCATGCTGGCAGCAACGGAGGCCACTTTGGAGCCCCCCTGGTGCAGATCCAGGCAGTGATCAGCAGTATTA
AA

Alignment

ORF - retro_tbel_3399 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 68.12 %
• Parental protein coverage: 63.59 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  KNHEEETSALR-GQVG-GQVSVEVDSAPGIDLAKILSDMRSQYEVMAEQNRK-DAEAWFISRTEELNREV
          KNHEEETS.LR.G..G.GQV..E.DSAPGI.L..IL.DMR.QYEVMAEQN...D.EAWF.SR.EE.N.EV
Retrocopy KNHEEETSVLR<GANGCGQVRMEMDSAPGIHLV*ILGDMRNQYEVMAEQNQR<DVEAWFTSRNEEFNWEV

Parental  AGHTE---QLQMSKSEVTDLRRTLQGLEIELQTQLSMKAALEGTLAETEA-RFGAQLAQIQALISSIE
          .GH.....QLQMSKSE..DL.RTL..LEIELQ.QLSMK...EG.LA.TEA..FGA.L.QIQA.ISSI.
Retrocopy SGHITVCVQLQMSKSEIIDLQRTLRSLEIELQSQLSMKVNREGMLAATEA<HFGAPLVQIQAVISSIK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq

Tupaia belangeri was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_tbel_3399 retrocopy.

TSS

Tupaia belangeri was not studied using FANTOM5 data.

Lab

retro_tbel_3399 was not experimentally validated.

Homology

Retrocopy orthology:

Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tupaia belangeri	ENSTBEG00000006491	1 retrocopy	retro_tbel_3399 ,