RetrogeneDB ID: retro_tbel_34

Retrocopy location

• Organism: Treeshrew (Tupaia belangeri)
• Coordinates: scaffold_136979:10379..10616(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSTBEG00000012536
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSTBEG00000015618
• Aliases: None
• Description: None

Sequence

>retro_tbel_34
ATGTGTGGCAGCTACTGCGGAAACTACTATGGAAACTGTGGCTATGGATGCTGTGGCTACGGAGGCCTGGGCTGTGGCTA
TGGTTGTGGCTATGGATGTGGCTTCCGCAGACTGGGCTGTGGCTATGGCTGTGGCTATGGAGGCCTGGGCTATGGCTATG
GCTGTGGTTATGGCTGTGGCTTCCGCAGACTGGGCTGTGGCTATGGCTGTGGCTCTGGGTTTGGCTACTACTACTGA

Alignment

ORF - retro_tbel_34 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 71.83 %
• Parental protein coverage: 97.01 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MCGSYYGNYYGGRGYGCCGYGGLGYGYGGLGCGYGCGY---GYGYGCGFRRLGCGYGCGYGCG---SGCG
          MCGSY.GNYYG..GYGCCGYGGLG.GYG...CGYGCG....G.GYGCG...LG.GYGCGYGCG....GCG
Retrocopy MCGSYCGNYYGNCGYGCCGYGGLGCGYG---CGYGCGFRRLGCGYGCGYGGLGYGYGCGYGCGFRRLGCG

Parental  Y
          Y
Retrocopy Y

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq

Tupaia belangeri was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_tbel_34 retrocopy.

TSS

Tupaia belangeri was not studied using FANTOM5 data.

Lab

retro_tbel_34 was not experimentally validated.

Homology

Retrocopy orthology:

Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Tupaia belangeri	ENSTBEG00000015618	2 retrocopies	retro_tbel_34 , retro_tbel_55,