RetrogeneDB ID: | retro_tbel_3726 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_149475:45887..46327(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DUSP12 | ||
Ensembl ID: | ENSTBEG00000015805 | ||
Aliases: | None | ||
Description: | dual specificity phosphatase 12 [Source:HGNC Symbol;Acc:3067] |
Percent Identity: | 56. % |
Parental protein coverage: | 54.44 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | LQNLPQELFAVD-PTTISQGSKDEVLYKCRKCRRSLFRSSSILYHNEGNGPIAFAHK-RVTPALMPTRGS |
LQNL..ELFAVD.P...........LYKCRKCR.SLF.SSSI...N.G.GP..FAHK...TP....T... | |
Retrocopy | LQNLT*ELFAVD<PSKSQKIER*GLLYKCRKCRQSLFQSSSIWSRNKGSGPTDFAHK>KKTPSYVHTTET |
Parental | PAQCTSYFIEPVQ-WMESTLLGVMDGQLLCPKCGAKLGSFNWYGEQCSCGRWVTPAFQMHKNRVDEMKTL |
..QC.S.FIEPV..W..STLLG.MD..LLCPKC.A.L...N..GEQCSC.R..TPAF...K..VD.M.TL | |
Retrocopy | QGQCVSCFIEPVH<WIKSTLLGEMD*HLLCPKCSARLSFLNLCGEQCSCDR*ITPAFKIPKHIVDKM*TL |
Parental | PVLGSQARKV |
.V.G.Q.RK. | |
Retrocopy | LVWGPQTRKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Otolemur garnettii | ENSOGAG00000000590 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000025153 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000015805 | 1 retrocopy |
retro_tbel_3726 ,
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