RetrogeneDB ID:

retro_tbel_385

Retrocopy
location
Organism:Treeshrew (Tupaia belangeri)
Coordinates:GeneScaffold_1916:71892..72354(-)
Located in intron of:ENSTBEG00000001612
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:FAM206A
Ensembl ID:ENSTBEG00000004984
Aliases:None
Description:family with sequence similarity 206, member A [Source:HGNC Symbol;Acc:1364]


Retrocopy-Parental alignment summary:






>retro_tbel_385
GTCAAAGAAAAACCCTGTGAGGACCACTGTATACTACAGCACTCCAACAGAATATGTGTCATCACATTGGCAGAATCTCA
CCTAGTTCTTCAAAGTGGAAAAATAATTAAAAGCATTTCTTATCAGATCAGTACCAACTGTAGCAGGCTTCAGAACAAGG
TCTCTGGGAAATTTAAATGGGGGGCACAATTTCTAACAGAATTGGCACCTCTGTTTAAGATTTCCTGCTCAGATGGAGAA
GAATATACCATATCTAGCTGTGTTAGAGGACGGTTGATGGAAGTGAATGAAAATATTCTCCATAAGCCATCTCTTCTTCA
AGAAAGGCCCTCCACCAAAGGCTACATTGCAGTTGTGTTACCCAAATTTGAAGAAAGTAAAAGTATAACAGAAGGGTTAC
TGACACAAAAACAATATGAAGAAGTTGTGGCGAAATGCGTTAATGCCACCACGGCCACGTCA

ORF - retro_tbel_385 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 94.81 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalVKGKPCEDHCILQHSNRICVITLAESHPVLQSGKIIKSISYQISTNCSRLQNKVSGKFKRGAQFLTELAP
VK.KPCEDHCILQHSNRICVITLAESH.VLQSGKIIKSISYQISTNCSRLQNKVSGKFK.GAQFLTELAP
RetrocopyVKEKPCEDHCILQHSNRICVITLAESHLVLQSGKIIKSISYQISTNCSRLQNKVSGKFKWGAQFLTELAP
ParentalLCKISCSDGEEYTISSCVRGRLMEVNENILHKPSILQEKPSTEGYIAVVLPKFEESKSITEGLLTQKQYE
L.KISCSDGEEYTISSCVRGRLMEVNENILHKPS.LQE.PST.GYIAVVLPKFEESKSITEGLLTQKQYE
RetrocopyLFKISCSDGEEYTISSCVRGRLMEVNENILHKPSLLQERPSTKGYIAVVLPKFEESKSITEGLLTQKQYE
ParentalEVVAKRVNATTATS
EVVAK.VNATTATS
RetrocopyEVVAKCVNATTATS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tupaia belangeri was not studied using RNA-Seq expression data.
Tupaia belangeri was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_tbel_385 retrocopy.
Tupaia belangeri was not studied using FANTOM5 data.
retro_tbel_385 was not experimentally validated.

Retrocopy orthology:
Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species Parental gene accession Retrocopies number
Macropus eugenii ENSMEUG000000136371 retrocopy
Monodelphis domestica ENSMODG000000125631 retrocopy
Tupaia belangeri ENSTBEG00000004984 2 retrocopies
retro_tbel_2689, retro_tbel_385 ,



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