>retro_tbel_4280
TCTGGCAGCACAGAGGGTAGCAAGACCAACTTTAGTAGTTAACCACCTGCCGCAGAACACGAGACAGGAGGGATTCAAGA
GTCTTTTGGGAAGCATTGGTGAGATAGAGTCCTGTAAGCTTGTAAGAGACAAAGCAACAGGACAGAGCTCGGGATGTGGC
TTTGTGAACTACATTGACCCCGAGGATGCAGAGAAAGCTATCAACACCCTGAATGGATTGTGACTTCAAACCAAAACAAT
CAAAGTTTCCTCTGCTCACCCAAGTTCAGCTTCTATCAGAGTTGCAAATGTATATGTCAGTGGACTTCCAAAAACAATGA
CCCAAAAGGAGTTGGAACAGCTGATTTCGCAGTATGGACGCATCATTACTTGTCGTCTTCTTGTTGGCCAGGTCACTGGC
ATATCCGGGGTTGTAGGGCTCATTCGATTTGACAAGCGGATTGAGGCAGAAGAAGCTATCAAAGGCCTCAATGGCCAGAA
ACCTCCTGGTGCCACAGAGCCAATCACTGAAAAGTTTGCTAATAATCCAAGCCAA
ORF - retro_tbel_4280 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
78.77 % |
Parental protein coverage: |
54.77 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | NGATDDSKTN-LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAIST |
| .G.T..SKTN.L.VN.LPQN..Q..FKSL.GSIG.IESCKLVRDK.TGQS.G.GFVNY.DP.DA.KAI.T |
Retrocopy | SGSTEGSKTN>LVVNHLPQNTRQEGFKSLLGSIGEIESCKLVRDKATGQSSGCGFVNYIDPEDAEKAINT |
|
Parental | LNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVG |
| LNGL.LQTKTIKVS.A.PSSASIR.AN.YVSGLPKTM.QKE.EQL.SQYGRIIT.R.LV.QVTG.S..VG |
Retrocopy | LNGL*LQTKTIKVSSAHPSSASIRVANVYVSGLPKTMTQKELEQLISQYGRIITCRLLVGQVTGISGVVG |
|
Parental | FIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQ |
| .IRFDKRIEAEEAIKGLNGQKP.GA.EPIT.KFANNPSQ |
Retrocopy | LIRFDKRIEAEEAIKGLNGQKPPGATEPITEKFANNPSQ |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Tupaia belangeri was not studied using RNA-Seq expression data.
Tupaia belangeri was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_tbel_4280 retrocopy.
Tupaia belangeri was not studied using FANTOM5 data.
retro_tbel_4280 was not experimentally validated.
Retrocopy orthology:
Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.