RetrogeneDB ID: retro_tbel_4593

Retrocopy location

• Organism: Treeshrew (Tupaia belangeri)
• Coordinates: scaffold_92311:7096..7392(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSTBEG00000000728
• Aliases: None
• Description: None

Sequence

>retro_tbel_4593
CGACCCCCTTGCCAGGATGCCTTGGGGACAGCCGCGGGCACTCACAGGGCCCTGGGTTCCGGCGGGCATTGTAGCATGCA
CTCACAGCCAGGGCGCATTGTGCCAGGAAGGGCACATTTCAAACCTTCGGGAAGGAAGTGCACCCCACAGACCAGTCGAT
GCGCCGTGGGCCTGCACTGTTCTCCAAGAGCCCGTCTGCTGTGAATGCCAGGTCAAACTCGGGGCCACCTGCCTGTGCCC
AGCGCTGAGGCAGCACTGCCTACTGGGCCCCTGCATCTCTGAGACCCCAAAAGCAG

Alignment

ORF - retro_tbel_4593 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 66.04 %
• Parental protein coverage: 63.46 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  RPPRQDA-LGTAAGTAGAGSGGRCSM---LTPRAHYARQSHTFQIFGEEVCPTDQSMHRGP-CTVLQEPI
          RPP.QDA.LG...G....G.G.R......LT.RAH.AR...TFQ.FG.EV.PTDQSM.RGP.CTVLQEP.
Retrocopy RPPCQDA<LGDSRGHS-QGPGFRRAL*HALTARAHCARKG-TFQTFGKEVHPTDQSMRRGP<CTVLQEPV

Parental  CCECQIKFG-GRLPVPRAEAALP-YWVPESLRPQKQ
          CCECQ.K.G.G.LPVP.AEAALP.YW.P.SLRPQKQ
Retrocopy CCECQVKLG<GHLPVPSAEAALP<YWAPASLRPQKQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq

Tupaia belangeri was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_tbel_4593 retrocopy.

TSS

Tupaia belangeri was not studied using FANTOM5 data.

Lab

retro_tbel_4593 was not experimentally validated.

Homology

Retrocopy orthology:

Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Tupaia belangeri	ENSTBEG00000000728	1 retrocopy	retro_tbel_4593 ,