RetrogeneDB ID:

retro_tbel_46

Retrocopy
location
Organism:Treeshrew (Tupaia belangeri)
Coordinates:scaffold_116173:85386..86994(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSTBEG00000012256
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:DYRK4
Ensembl ID:ENSTBEG00000006370
Aliases:None
Description:dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4 [Source:HGNC Symbol;Acc:3095]


Retrocopy-Parental alignment summary:






>retro_tbel_46
ATTGGTGGCAGTAAGCACACAATGAATGATCACTTGCATGTCGGCAGCCACAGCCACGGACAGATCCAGGTTCAACAGCT
GTTTGAGGATAACAGTAACAAGCGGACAGTGCTCACGACACAACCAAATGGGCTTACAACAGTGGGCAAAGCAGGCTTGC
CGGTGGTGCCAGAACGGCAGCTGGAGAGCATCCACCGACGGCAGGGGAGCTCCACCTCTCTGAAGTCCATGGAAGGCATG
GGGAAGGTGAAAACCTCACCCATGACACCTGAACAAGCAATGAAGCAATACATGCAAAAACTAACGGCCTTTGAACACCA
CGAGATTTTCAGCTACCCTGAAATATATTTCTTGGGTCCAAATGCAAAAAAGCGTCAGGGCATGACAGGAGGGCCTAATA
ATGGTGGCTATGACGATGACCAAGGATCATACGTGCAGGTGCCCCACGATCACGTGGCTTACAGGTACGAGGTCCTCAAA
GTCATCGGGAAAGGGAGCTTCGGGCAGGTGGTCAAGGCCTATGATCACAAAGTCCACCAGCACGTGGCCCTGAAGATGGT
GCGGAACGAGAAGCGCTTCCACCGGCAGGCAGCGGAGGAGATCCGAATCCTGGAACACCTGCGGAAGCAGGACAAGGACA
ACACCATGAACGTCATCCACATGCTGGAGAATTTTACCTTCCGCAACCACATCTGCATGACGTTTGAGCTGCTGAGTATG
AACCTCTATGAGCTCATCAAGAAGAATAAATTCCAGGGCTTTAGCCTGCCTTTGGTCCGTAAGTTTGCCCACTCAATTCT
GCAGTGCTTGGATGCTTTGCACAAAAACAGAATAATTCACTGTGACCTTAAGCCCGAGAACATTTTGTTGAAGCAGCAGG
GTAGAAGTGGTATTAAAGTGATTGATTTTGGCTCCAGTTGTTATGAGCATCAACGTGTCTACACGTACATCCAGTCACGG
TTTTACCGGGCTCCAGAAGTGATCCTGGGGGCCAGGTATGGCATGCCTATTGATATGTGGAGCCTGGGCTGCATTTTGGC
AGAGCTCCTGACAGGTTACCCCCTTTTGCCTGGGGAAGACGAGGGGGACCAGCTGGCCTGTATGATTGAACTGTTGGGTA
TGCCCTCCCAGAAACTGCTGGATGCATCCAAACGAGCCAAAAATTTTGTGAGCTCCAAGGGGTATCCCCGTTACTGCACT
GTCACCACTCTCTCAGACGGCTCCGTGGTCCTCAATGGAGGCCGTTCCCGGAGAGGGAAACTGAGGGGCCCACCAGAGAG
CAGAGAGTGGGGAAATGCACTGAAGGGGTGTGACGACCCCCTATTCCTTGACTTCTTAAAGCAGTGTTTAGAATGGGATC
CTGCAGTTCGTATGACCCCCGGCCAGGCTTTACGACATCCCTGGCTGAGACGGCGGCTGCCCAAGCCTCCGACTGGGGAG
AAGACGGCAGTGAAGAGGATAACGGAGAGCGCTGGTGCTATCACATCGATTTCCAAGTTACCTCCACCTTCCAGCTCAGC
TTCCAAACTGAGGACTAATTTGGCACAAATGACGGATGCCAATGGGAATATTCAGCAGAGGACAGTGTTGCCAAAACTCG
TTAGCTGA

ORF - retro_tbel_46 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 59.6 %
Parental protein coverage: 75.69 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalALKLFKDQLSPYEQSEILGYTELWFLGLDAEKLNVTPEKFSKTSFDDEHGSYMKVLHDHIAYRYEVLEMI
A.K.....L...E..EI..Y.E..FLG..A.K.............DD..GSY..V.HDH.AYRYEVL..I
RetrocopyAMKQYMQKLTAFEHHEIFSYPEIYFLGPNAKKRQGMTGGPNNGGYDDDQGSYVQVPHDHVAYRYEVLKVI
ParentalGKGSFGQVPKCLDHKNNELVALKIIRNKKRFHHQALVELKILEALRRKDKDNTHNVVHMKDFFYFRNHLC
GKGSFGQV.K..DHK....VALK..RN.KRFH.QA..E..ILE.LR..DKDNT.NV.HM...F.FRNH.C
RetrocopyGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHIC
ParentalITFELLGINLYELMKNNSFQGFSLSIVRRFTLSVLKCLQMLYVEKIIHCDLKPENIVLYQKGQVSVKVID
.TFELL..NLYEL.K.N.FQGFSL..VR.F..S.L.CL..L....IIHCDLKPENI.L.Q.G....KVID
RetrocopyMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVID
ParentalFGSSCYDHQKVYTYIQSRFYRSPEVILGHPYNMAIDMWSLGCIMAELYTGYPLFPGENEVEQLACIMEVL
FGSSCY.HQ.VYTYIQSRFYR.PEVILG..Y.M.IDMWSLGCI.AEL.TGYPL.PGE.E..QLAC..E.L
RetrocopyFGSSCYEHQRVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGEDEGDQLACMIELL
ParentalGLPPTRFIQTASRRQTFFDSKG
G.P.........R...F..SKG
RetrocopyGMPSQKLLDASKRAKNFVSSKG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Tupaia belangeri was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_tbel_46 retrocopy.

TSS - click to see more details

Tupaia belangeri was not studied using FANTOM5 data.

Lab - click to see more details

retro_tbel_46 was not experimentally validated.

Retrocopy orthology:
Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Tupaia belangeri ENSTBEG00000006370 1 retrocopy
retro_tbel_46 ,


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