RetrogeneDB ID: retro_tbel_649

Retrocopy location

• Organism: Treeshrew (Tupaia belangeri)
• Coordinates: GeneScaffold_2664:236016..236260(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: OARD1
• Ensembl ID: ENSTBEG00000003787
• Aliases: None
• Description: O-acyl-ADP-ribose deacylase 1 [Source:HGNC Symbol;Acc:21257]

Sequence

>retro_tbel_649
ATGGCCAGCAGCCTTAATGAAGACTCAGAAGGCAGCAGGACCACTTATGTGAAACGAGACCTTTTTGTGTGCCCCAAAAC
AGACTCTTTAGCCCACAGTATCAGTGAGGATTATCGCATGGGTGCTGGGATAGCTGTCCTCTTCAAGAAGAAATTTGGAG
GGGTGCAGAAACTATTAAATCAACAAAAGAACGTCTGAAGAAGTGGCTGTTCTGAAGAGGGATGGGTGTTATATATATTA
TTTG

Alignment

ORF - retro_tbel_649 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.59 %
• Parental protein coverage: 51.59 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MASSLNEDPEGSRITYVKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKKFGGVQELLNQQKK-SGEVA
          MASSLNED.EGSR.TYVK.DLF.CPKTDSLAH.ISED.RMGAGIAVLFKKKFGGVQ.LLNQQK..S.EVA
Retrocopy MASSLNEDSEGSRTTYVKRDLFVCPKTDSLAHSISEDYRMGAGIAVLFKKKFGGVQKLLNQQKN>SEEVA

Parental  VLKRDGRYIYYL
          VLKRDG.YIYYL
Retrocopy VLKRDGCYIYYL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq

Tupaia belangeri was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_tbel_649 retrocopy.

TSS

Tupaia belangeri was not studied using FANTOM5 data.

Lab

retro_tbel_649 was not experimentally validated.

Homology

Retrocopy orthology:

Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Sorex araneus	ENSSARG00000009758	1 retrocopy	retro_sara_42,
Tupaia belangeri	ENSTBEG00000003787	1 retrocopy	retro_tbel_649 ,
Tarsius syrichta	ENSTSYG00000007174	3 retrocopies	retro_tsyr_17, retro_tsyr_1818, retro_tsyr_7,