RetrogeneDB ID: retro_tbel_662

Retrocopy location

• Organism: Treeshrew (Tupaia belangeri)
• Coordinates: GeneScaffold_2687:484466..484708(+)
• Located in intron of: ENSTBEG00000009487

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TMEM65
• Ensembl ID: ENSTBEG00000000828
• Aliases: None
• Description: transmembrane protein 65 [Source:HGNC Symbol;Acc:25203]

Sequence

>retro_tbel_662
GCTGCTGCTTTGGGAATTCTTGTGTCAGATTTAGCTGAACTTGGAGTTGCAGGCTGTCTTGACGCTTTGGCTTCCAGGTT
AGGCCTGTCAGTTCCTGATCTCACACCAAAGCAAATTGACATGTGTTAGTACACATTTGGGCAAAGCTGTTGGGGTGACT
ATGGGCTACATTCTAGGTGTGTTTCCTTTGATTTATTTATTTTTTTTTTGGAGGAGGTGAAGATGAAAAACTGGAAAAGA
AA

Alignment

ORF - retro_tbel_662 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 51.19 %
• Parental protein coverage: 59.85 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  AAALGNLVSDLAGLGLAGYVEALAPRLGLSIPDLTPKQVDMW-QTRVSTHLVKAVGVTIG-CILGMFPLI
          AAALG.LVSDLA.LG.AG...ALA.RLGLS.PDLTPKQ.DM...T..........G...G.C.L......
Retrocopy AAALGILVSDLAELGVAGCLDALASRLGLSVPDLTPKQIDMC>STHLGKAVGVTMGYILG>CFL*FIXXX

Parental  FFGGGEEDEKLKRK
          ..GG..E..KL..K
Retrocopy XGGGEDE--KLEKK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq

Tupaia belangeri was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_tbel_662 retrocopy.

TSS

Tupaia belangeri was not studied using FANTOM5 data.

Lab

retro_tbel_662 was not experimentally validated.

Homology

Retrocopy orthology:

Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000026901	1 retrocopy	retro_fcat_1886,
Tupaia belangeri	ENSTBEG00000000828	1 retrocopy	retro_tbel_662 ,
Tarsius syrichta	ENSTSYG00000002828	1 retrocopy	retro_tsyr_1697,